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nlme : Linear and nonlinear mixed effects models
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The article was published on 2006-01-01 and is currently open access. It has received 9437 citations till now.read more
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Species coexistence and the dynamics of phenotypic evolution in adaptive radiation.
Joe Tobias,Charlie K. Cornwallis,Elizabeth P. Derryberry,Santiago Claramunt,Robb T. Brumfield,Nathalie Seddon +5 more
TL;DR: The results conflict with the conventional view that coexistence promotes trait divergence among co-occurring organisms at macroevolutionary scales, and instead provide evidence that species interactions can drive phenotypic convergence across entire radiations, a pattern generally concealed by biases in age.
Journal ArticleDOI
CpGassoc: an R function for analysis of DNA methylation microarray data
TL;DR: CpGassoc is a modular, expandable package with functions to perform rapid analyses of DNA methylation data via fixed or mixed effects models, to perform basic quality control, to carry out permutation tests, and to display results via an array of publication-quality plots.
Journal ArticleDOI
Maternal and infant infections stimulate a rapid leukocyte response in breastmilk
Foteini Hassiotou,Anna R. Hepworth,Philipp Metzger,Ching Tat Lai,Naomi Trengove,Peter E. Hartmann,Luis Filgueira +6 more
TL;DR: A strong association between the health status of the mother/infant dyad and breastmilk leukocyte levels is suggested, which could be used as a diagnostic tool for assessment of the health Status of the lactating breast as well as the breastfeeding mother and infant.
Journal ArticleDOI
What controls tropical forest architecture: testing environmental, structural and floristic drivers
Lindsay F. Banin,Lindsay F. Banin,Ted R. Feldpausch,Oliver L. Phillips,Timothy R. Baker,Jon Lloyd,Jon Lloyd,Kofi Affum-Baffoe,Eric Arets,Nicholas J. Berry,Nicholas J. Berry,Matt Bradford,Roel J. W. Brienen,Stuart J. Davies,Stuart J. Davies,Michael Drescher,Niro Higuchi,David W. Hilbert,Annette Hladik,Yoshiko Iida,K. Abu Salim,Abdul Rahman Kassim,D. A. King,Gabriela Lopez-Gonzalez,Daniel J. Metcalfe,Reuben Nilus,Kelvin S.-H. Peh,Kelvin S.-H. Peh,Jan Reitsma,Bonaventure Sonké,Hermann Taedoumg,Sylvester Tan,Lee J. T. White,Hannsjörg Wöll,Simon L. Lewis,Simon L. Lewis +35 more
TL;DR: In this paper, the extent to which the vertical structure of tropical forests is determined by environment, forest structure or biogeographical history was tested using height and diameter data from 20,497 trees in 112 non-contiguous plots.
Journal ArticleDOI
Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants
TL;DR: Simulations reveal that mutation‐disruption, which results in phylogenetically distributed missing data, can be distinguished from the more stochastic patterns of missing data caused by low sequencing coverage.