scispace - formally typeset
Open AccessJournal ArticleDOI

Rsx is a metatherian RNA with Xist -like properties in X-chromosome inactivation

Reads0
Chats0
TLDR
Using the marsupial Monodelphis domestica, Rsx (RNA-on-the-silent X), an RNA is identified that has properties consistent with a role in X-chromosome inactivation, and is found to be a large, repeat-rich RNA that is expressed only in females and is transcribed from, and coats, the inactive X chromosome.
Abstract
In female (XX) mammals, one of the two X chromosomes is inactivated to ensure an equal dose of X-linked genes with males (XY). X-chromosome inactivation in eutherian mammals is mediated by the non-coding RNA Xist. Xist is not found in metatherians (marsupials), and how X-chromosome inactivation is initiated in these mammals has been the subject of speculation for decades. Using the marsupial Monodelphis domestica, here we identify Rsx (RNA-on-the-silent X), an RNA that has properties consistent with a role in X-chromosome inactivation. Rsx is a large, repeat-rich RNA that is expressed only in females and is transcribed from, and coats, the inactive X chromosome. In female germ cells, in which both X chromosomes are active, Rsx is silenced, linking Rsx expression to X-chromosome inactivation and reactivation. Integration of an Rsx transgene on an autosome in mouse embryonic stem cells leads to gene silencing in cis. Our findings permit comparative studies of X-chromosome inactivation in mammals and pose questions about the mechanisms by which X-chromosome inactivation is achieved in eutherians.

read more

Content maybe subject to copyright    Report

Citations
More filters
Journal ArticleDOI

Unique features of long non-coding RNA biogenesis and function

TL;DR: This Review describes special events in the lifetimes of lncRNAs — before, during and after transcription — and discusses how these events ultimately shape the unique characteristics and functional roles of lNCRNAs.

Integrative Genomics Viewer

TL;DR: The sheer volume and scope of data posed by this flood of data pose a significant challenge to the development of efficient and intuitive visualization tools able to scale to very large data sets and to flexibly integrate multiple data types, including clinical data.
Journal ArticleDOI

Structure and function of long noncoding RNAs in epigenetic regulation

TL;DR: This work focuses on the well-characterized ability for lncRNAs to function as epigenetic modulators, and suggests that lnc RNAs may be part of a broad epigenetic regulatory network.
Journal ArticleDOI

The evolution of lncRNA repertoires and expression patterns in tetrapods

TL;DR: It is found that lncRNAs, in particular ancient ones, are in general actively regulated and may function predominantly in embryonic development, and an evolutionarily conserved co-expression network is reconstructed.
Journal ArticleDOI

X-Inactivation, Imprinting, and Long Noncoding RNAs in Health and Disease

TL;DR: Recent advances in basic biology, the connections to disease, and potential therapeutic strategies for future development are reviewed, including long noncoding RNAs as a common theme.
References
More filters
Journal ArticleDOI

The Sequence Alignment/Map format and SAMtools

TL;DR: SAMtools as discussed by the authors implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments.
Journal ArticleDOI

Fast and accurate short read alignment with Burrows–Wheeler transform

TL;DR: Burrows-Wheeler Alignment tool (BWA) is implemented, a new read alignment package that is based on backward search with Burrows–Wheeler Transform (BWT), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps.
Journal ArticleDOI

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

TL;DR: Induction of pluripotent stem cells from mouse embryonic or adult fibroblasts by introducing four factors, Oct3/4, Sox2, c-Myc, and Klf4, under ES cell culture conditions is demonstrated and iPS cells, designated iPS, exhibit the morphology and growth properties of ES cells and express ES cell marker genes.
Journal ArticleDOI

RNA-Seq: a revolutionary tool for transcriptomics

TL;DR: The RNA-Seq approach to transcriptome profiling that uses deep-sequencing technologies provides a far more precise measurement of levels of transcripts and their isoforms than other methods.
Journal ArticleDOI

Integrative genomics viewer

TL;DR: In this article, the authors present an approach for efficient and intuitive visualization tools able to scale to very large data sets and to flexibly integrate multiple data types, including clinical data.
Related Papers (5)