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The Balance between the MIR164A and CUC2 Genes Controls Leaf Margin Serration in Arabidopsis

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TLDR
It is suggested that leaf margin development is controlled by a two-step process in Arabidopsis, which involves coexpressed CUC2 and MIR164A and transcription gradually restricted to the sinus, where the leaf margins become serrated.
Abstract
CUP-SHAPED COTYLEDON1 (CUC1), CUC2, and CUC3 define the boundary domain around organs in the Arabidopsis thaliana meristem. CUC1 and CUC2 transcripts are targeted by a microRNA (miRNA), miR164, encoded by MIR164A, B, and C. We show that each MIR164 is transcribed to generate a large population of primary miRNAs of variable size with a locally conserved secondary structure around the pre-miRNA. We identified mutations in the MIR164A gene that deepen serration of the leaf margin. By contrast, leaves of plants overexpressing miR164 have smooth margins. Enhanced leaf serration was observed following the expression of an miR164-resistant CUC2 but not of an miR164-resistant CUC1. Furthermore, CUC2 inactivation abolished serration in mir164a mutants and the wild type, whereas CUC1 inactivation did not. Thus, CUC2 specifically controls leaf margin development. CUC2 and MIR164A are transcribed in overlapping domains at the margins of young leaf primordia, with transcription gradually restricted to the sinus, where the leaf margins become serrated. We suggest that leaf margin development is controlled by a two-step process in Arabidopsis. The pattern of serration is determined first, independently of CUC2 and miR164. The balance between coexpressed CUC2 and MIR164A then determines the extent of serration.

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Origin, biogenesis, and activity of plant microRNAs.

TL;DR: Current advances in understanding of the origin, biogenesis, and mode of action of plant miRNAs are discussed and comparisons with their metazoan counterparts are drawn.
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TL;DR: The biogenesis and function of three major classes of endogenous small RNAs in plants: microRNAs, trans-acting si RNAs, and heterochromatic siRNAs are reviewed, with an emphasis on the roles of these smallRNAs in developmental regulation.
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MicroRNAs: synthesis, mechanism, function, and recent clinical trials.

TL;DR: In this review, the existing knowledge about miRNAs synthesis, mechanisms for regulation of the genome, and their widespread functions in animals and plants is summarized and the current status of preclinical and clinical trials regarding miRNA therapeutics is reviewed.
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Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

TL;DR: It is shown that miR396 attenuates cell proliferation in developing leaves, through the repression of GRF activity and a decrease in the expression of cell cycle genes, and can regulate cell proliferation and the size of the meristem.
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TCP Transcription Factors Control the Morphology of Shoot Lateral Organs via Negative Regulation of the Expression of Boundary-Specific Genes in Arabidopsis

TL;DR: The results demonstrate that the TCP transcription factors play a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes.
References
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Journal ArticleDOI

Mfold web server for nucleic acid folding and hybridization prediction

TL;DR: The objective of this web server is to provide easy access to RNA and DNA folding and hybridization software to the scientific community at large by making use of universally available web GUIs (Graphical User Interfaces).
Journal ArticleDOI

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

TL;DR: An improved dynamic programming algorithm is reported for RNA secondary structure prediction by free energy minimization and experimental constraints, derived from enzymatic and flavin mononucleotide cleavage, improve the accuracy of structure predictions.
Journal ArticleDOI

Prediction of Plant MicroRNA Targets

TL;DR: This work predicts regulatory targets for 14 Arabidopsis microRNAs (miRNAs) by identifying mRNAs with near complementarity and identifies members of transcription factor gene families involved in developmental patterning or cell differentiation.
PatentDOI

MicroRNAs in plants

TL;DR: Mutation of an Arabidopsis Dicer homolog, CARPEL FACTORY, prevents the accumulation of miRNAs, showing that similar mechanisms direct miRNA processing in plants and animals.
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