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The effect of environmental conditions on expression of Bacteroides fragilis and Bacteroides thetaiotaomicron C10 protease genes

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TLDR
Genes encoding C10 proteases are increasingly identified in operons which also contain genes encoding proteins homologous to protease inhibitors, suggesting they may have distinct roles in the bacterial-host interaction.
Abstract
Bacteroides fragilis and Bacteroides thetaiotaomicron are members of the normal human intestinal microbiota. However, both organisms are capable of causing opportunistic infections, during which the environmental conditions to which the bacteria are exposed change dramatically. To further explore their potential for contributing to infection, we have characterized the expression in B. thetaiotaomicron of four homologues of the gene encoding the C10 cysteine protease SpeB, a potent extracellular virulence factor produced by Streptococcus pyogenes. We identified a paralogous set of genes (btp genes) in the B. thetaiotaomicron genome, that were related to C10 protease genes we recently identified in B. fragilis. Similar to C10 proteases found in B. fragilis, three of the B. thetaiotaomicron homologues were transcriptionally coupled to genes encoding small proteins that are similar in structural architecture to Staphostatins, protease inhibitors associated with Staphopains in Staphylococcus aureus. The expression of genes for these C10 proteases in both B. fragilis and B. thetaiotaomicron was found to be regulated by environmental stimuli, in particular by exposure to oxygen, which may be important for their contribution to the development of opportunistic infections. Genes encoding C10 proteases are increasingly identified in operons which also contain genes encoding proteins homologous to protease inhibitors. The Bacteroides C10 protease gene expression levels are responsive to different environmental stimuli suggesting they may have distinct roles in the bacterial-host interaction.

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Citations
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Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals

TL;DR: The first whole genome exploration of the Bacteroidales family S24-7 is provided, for which the name “Candidatus Homeothermaceae” is proposed, using 30 population genomes extracted from fecal samples of four different animal hosts.
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Good gone bad: One toxin away from disease for Bacteroides fragilis

TL;DR: The recent observation of ETBF-bearing biofilms in colon biopsies from humans with colon cancer susceptibility loci strongly suggests that ETBF is a driver of colorectal cancer.
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Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe

TL;DR: The temperate phage, Bacteroides phage BV01, broadly alters its host’s transcriptome, the prominent human gut symbiont Bactroides vulgatus, demonstrating the complexity of phage-bacteria-mammal relationships and emphasize a need to better understand the role of temperates phages in the gut microbiome.
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Gut microbiota: a new angle for traditional herbal medicine research

TL;DR: It is hypothesized that most THMs treat diseases via three mechanisms: metabolizing into active metabolites by the action of gut microbiota, regulation of Gut microbiota balance, and regulating the fermentation products of the gut microbes.
References
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Journal ArticleDOI

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TL;DR: The composition and spatial organization of the mucosal flora in biopsy specimens from patients with inflammatory bowel disease, self-limiting colitis, irritable-bowel syndrome, and healthy controls were investigated by using a broad range of fluorescent bacterial group-specific rRNA-targeted oligonucleotide probes.
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Pore-forming cytolysins of gram-negative bacteria.

TL;DR: The genetics and biochemistry of a large, newly discovered family of calcium‐dependent, pore‐forming cytotoxins (RTX toxins) produced by different genera of the Enterobacteriaceae and Pasteurellaceae are discussed and emerging questions about the role of cytolysins in pathogenesis are presented.
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Functional characterization of extracellular vesicles produced by Bacteroides gingivalis.

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TL;DR: The results indicated that the enriched vesicle fraction had a high proteolytic activity against collagen, Azocoll, and N-alpha-benzoyl-DL-arginine p-nitroanilide, and these vesicles could play an important role in periodontal diseases by serving as a vehicle for toxins and various proteolytics enzymes, as well as being involved in adherence.
Journal ArticleDOI

Extensive DNA inversions in the B. fragilis genome control variable gene expression

TL;DR: The complete genome sequence has revealed an unusual breadth of DNA inversion events that potentially control expression of many different components, including surface and secreted components, regulatory molecules, and restriction-modification proteins.
Journal ArticleDOI

A role for Trigger Factor and an Rgg-like regulator in the transcription, secretion and processing of the cysteine proteinase of Streptococcus pyogenes

TL;DR: Analysis of additional ropA mutants demonstrated that RopA acts both to assist in targeting SCP to the secretory pathway and to promote the ability of the proprotein to establish an active conformation upon secretion, providing insight into the function of Trigger Factor, the regulation of proteinase activity and the mechanism of secretion in Gram‐positive bacteria.
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