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Wnt addiction of genetically defined cancers reversed by PORCN inhibition

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TLDR
A novel potent, orally available PORCN inhibitor, ETC-1922159, that blocks the secretion and activity of all Wnts is developed that is remarkably effective in treating RSPO-translocation bearing colorectal cancer patient-derived xenografts.
Abstract
Enhanced sensitivity to Wnts is an emerging hallmark of a subset of cancers, defined in part by mutations regulating the abundance of their receptors. Whether these mutations identify a clinical opportunity is an important question. Inhibition of Wnt secretion by blocking an essential post-translational modification, palmitoleation, provides a useful therapeutic intervention. We developed a novel potent, orally available PORCN inhibitor, ETC-1922159 (henceforth called ETC-159) that blocks the secretion and activity of all Wnts. ETC-159 is remarkably effective in treating RSPO-translocation bearing colorectal cancer (CRC) patient-derived xenografts. This is the first example of effective targeted therapy for this subset of CRC. Consistent with a central role of Wnt signaling in regulation of gene expression, inhibition of PORCN in RSPO3-translocated cancers causes a marked remodeling of the transcriptome, with loss of cell cycle, stem cell and proliferation genes, and an increase in differentiation markers. Inhibition of Wnt signaling by PORCN inhibition holds promise as differentiation therapy in genetically defined human cancers.

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Journal ArticleDOI

A p300/GATA6 axis determines differentiation and Wnt dependency in pancreatic cancer models

TL;DR: It is found that EP300 is silenced due to genetic alterations in all the existing RNF43-mutant pancreatic cancer cell lines that are resistant to PORCN inhibitors, rendering these cancer cells resistant to Wnt inhibition.
Journal ArticleDOI

Cross-Talk between Wnt Signaling and Src Tyrosine Kinase

TL;DR: It is noted that aberrant regulation of these components give rise to various diseases including typically cancer, and as such, merit a closer look.
Journal ArticleDOI

Broad regulation of gene isoform expression by Wnt signaling in cancer.

TL;DR: Deep time-resolved RNA-seq in two independent in vivo Wnt-addicted tumor models during treatment with the potent Wnt inhibitor ETC-159 found 1,025 genes that underwent Wnt regulated variable exon usage leading to isoform expression changes, suggesting that the Wntregulated splicing events are components of fundamental oncogenic processes.
Journal ArticleDOI

Determination of the membrane topology of PORCN, an O-acyl transferase that modifies Wnt signalling proteins

TL;DR: In this paper, the authors used experimental data along with homology modelling to determine the membrane topology of PORCN, a membrane-bound O-acyl transferase (MBOAT) that catalyses the addition of monounsaturated palmitate to Wnt proteins and is required for Wnt gradient formation and signalling.
Journal ArticleDOI

A p300/GATA6 axis determines differentiation and Wnt dependency in pancreatic cancer models

TL;DR: Wang et al. as discussed by the authors performed in vivo CRISPR screens in PORCN inhibitor-sensitive RNF43-mutant pancreatic cancer xenografts and identified genes in the Wnt pathway whose loss conferred drug resistance, including APC, AXIN1, and CTNNBIP1.
References
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Journal ArticleDOI

HTSeq—a Python framework to work with high-throughput sequencing data

TL;DR: This work presents HTSeq, a Python library to facilitate the rapid development of custom scripts for high-throughput sequencing data analysis, and presents htseq-count, a tool developed with HTSequ that preprocesses RNA-Seq data for differential expression analysis by counting the overlap of reads with genes.
Journal ArticleDOI

Differential expression analysis for sequence count data.

Simon Anders, +1 more
- 27 Oct 2010 - 
TL;DR: A method based on the negative binomial distribution, with variance and mean linked by local regression, is proposed and an implementation, DESeq, as an R/Bioconductor package is presented.
Journal ArticleDOI

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

TL;DR: TopHat2 is described, which incorporates many significant enhancements to TopHat, and combines the ability to identify novel splice sites with direct mapping to known transcripts, producing sensitive and accurate alignments, even for highly repetitive genomes or in the presence of pseudogenes.

c-MYC-regulated micro RNAs modulate E2F1 expression

TL;DR: In this article, the proto-oncogene c-myc was found to activate expression of a cluster of six miRNAs on human chromosome 13 and showed that miR-17-5p and miR20a are negatively regulated by E2F1.
Journal ArticleDOI

c-Myc-regulated microRNAs modulate E2F1 expression.

TL;DR: A mechanism through which c-Myc simultaneously activates E2F1 transcription and limits its translation, allowing a tightly controlled proliferative signal is revealed.
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