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Wnt addiction of genetically defined cancers reversed by PORCN inhibition

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TLDR
A novel potent, orally available PORCN inhibitor, ETC-1922159, that blocks the secretion and activity of all Wnts is developed that is remarkably effective in treating RSPO-translocation bearing colorectal cancer patient-derived xenografts.
Abstract
Enhanced sensitivity to Wnts is an emerging hallmark of a subset of cancers, defined in part by mutations regulating the abundance of their receptors. Whether these mutations identify a clinical opportunity is an important question. Inhibition of Wnt secretion by blocking an essential post-translational modification, palmitoleation, provides a useful therapeutic intervention. We developed a novel potent, orally available PORCN inhibitor, ETC-1922159 (henceforth called ETC-159) that blocks the secretion and activity of all Wnts. ETC-159 is remarkably effective in treating RSPO-translocation bearing colorectal cancer (CRC) patient-derived xenografts. This is the first example of effective targeted therapy for this subset of CRC. Consistent with a central role of Wnt signaling in regulation of gene expression, inhibition of PORCN in RSPO3-translocated cancers causes a marked remodeling of the transcriptome, with loss of cell cycle, stem cell and proliferation genes, and an increase in differentiation markers. Inhibition of Wnt signaling by PORCN inhibition holds promise as differentiation therapy in genetically defined human cancers.

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Journal ArticleDOI

The Regulation of Bone Metabolism and Disorders by Wnt Signaling

TL;DR: The clinical significance and future scopes of Wnt signaling in osteoporosis, osteoarthritis, rheumatoid arthritis and neoplasia are discussed, and its role in bone metabolism and its involvement in skeletal disorders are covered.
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Biomarker-guided therapy for colorectal cancer: strength in complexity

TL;DR: An overview of current and emerging clinically relevant biomarkers and their role in the management of patients with CRC is provided, illustrating the intricacies of biomarker interactions and the growing treatment opportunities created by the availability of comprehensive molecular profiling.
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Treatment sequencing in metastatic colorectal cancer

TL;DR: Current treatment approaches and optimal treatment sequencing across the first-, second- and third-line settings in mCRC are reviewed, including biological aspects affecting sequencing and rechallenge.

Xenome--a tool for classifying reads from xenograft samples

TL;DR: A technique, with an associated tool Xenome, which performs fast, accurate and specific classification of xenograft-derived sequence read data, which has evaluated it on RNA-Seq data from human, mouse and human-in-mouse xenografted datasets.
Journal ArticleDOI

Wnt Signaling in Cancer Stem Cell Biology

Felipe De Sousa E Melo, +1 more
- 27 Jun 2016 - 
TL;DR: This review attempts at summarizing the intricacies between Wnt signaling and cancer stem cell biology with a special emphasis on colorectal cancer.
References
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Journal ArticleDOI

HTSeq—a Python framework to work with high-throughput sequencing data

TL;DR: This work presents HTSeq, a Python library to facilitate the rapid development of custom scripts for high-throughput sequencing data analysis, and presents htseq-count, a tool developed with HTSequ that preprocesses RNA-Seq data for differential expression analysis by counting the overlap of reads with genes.
Journal ArticleDOI

Differential expression analysis for sequence count data.

Simon Anders, +1 more
- 27 Oct 2010 - 
TL;DR: A method based on the negative binomial distribution, with variance and mean linked by local regression, is proposed and an implementation, DESeq, as an R/Bioconductor package is presented.
Journal ArticleDOI

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

TL;DR: TopHat2 is described, which incorporates many significant enhancements to TopHat, and combines the ability to identify novel splice sites with direct mapping to known transcripts, producing sensitive and accurate alignments, even for highly repetitive genomes or in the presence of pseudogenes.

c-MYC-regulated micro RNAs modulate E2F1 expression

TL;DR: In this article, the proto-oncogene c-myc was found to activate expression of a cluster of six miRNAs on human chromosome 13 and showed that miR-17-5p and miR20a are negatively regulated by E2F1.
Journal ArticleDOI

c-Myc-regulated microRNAs modulate E2F1 expression.

TL;DR: A mechanism through which c-Myc simultaneously activates E2F1 transcription and limits its translation, allowing a tightly controlled proliferative signal is revealed.
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