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Hyun Soo Kim
Researcher at University of Texas MD Anderson Cancer Center
Publications - 8
Citations - 7699
Hyun Soo Kim is an academic researcher from University of Texas MD Anderson Cancer Center. The author has contributed to research in topics: DNA methylation & Cancer. The author has an hindex of 7, co-authored 8 publications receiving 6926 citations. Previous affiliations of Hyun Soo Kim include Yonsei University & Harvard University.
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Journal ArticleDOI
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
Roger E. McLendon,Allan H. Friedman,Darrell D. Bigner,Erwin G. Van Meir,Daniel J. Brat,Gena M. Mastrogianakis,Jeffrey J. Olson,Tom Mikkelsen,Norman L. Lehman,Kenneth Aldape,W. K. Alfred Yung,Oliver Bogler,John N. Weinstein,Scott R. VandenBerg,Mitchel S. Berger,Michael D. Prados,Donna M. Muzny,Margaret Morgan,Steve Scherer,Aniko Sabo,Lynn Nazareth,Lora Lewis,Otis Hall,Yiming Zhu,Yanru Ren,Omar Alvi,Jiqiang Yao,Alicia Hawes,Shalini N. Jhangiani,Gerald R. Fowler,Anthony San Lucas,Christie Kovar,Andrew Cree,Huyen Dinh,Jireh Santibanez,Vandita Joshi,Manuel L. Gonzalez-Garay,Christopher A. Miller,Aleksandar Milosavljevic,Lawrence A. Donehower,David A. Wheeler,Richard A. Gibbs,Kristian Cibulskis,Carrie Sougnez,Timothy Fennell,Scott Mahan,Jane Wilkinson,Liuda Ziaugra,Robert C. Onofrio,Toby Bloom,Rob Nicol,Kristin G. Ardlie,Jennifer Baldwin,Stacey Gabriel,Eric S. Lander,Eric S. Lander,Li Ding,Robert S. Fulton,Michael D. McLellan,John W. Wallis,David E. Larson,Xiaoqi Shi,Rachel Abbott,Lucinda Fulton,Ken Chen,Daniel C. Koboldt,Michael C. Wendl,Rick Meyer,Yuzhu Tang,Ling Lin,John R. Osborne,Brian H. Dunford-Shore,Tracie L. Miner,Kim D. Delehaunty,Chris Markovic,Gary W. Swift,William Courtney,Craig Pohl,Scott Abbott,Amy Hawkins,Shin Leong,Carrie A. Haipek,Heather Schmidt,Maddy Wiechert,Tammi L. Vickery,Sacha Scott,David J. Dooling,Asif T. Chinwalla,George M. Weinstock,Elaine R. Mardis,Richard K. Wilson,Gad Getz,Wendy Winckler,Roel G.W. Verhaak,Michael S. Lawrence,Michael J. T. O’Kelly,James A. Robinson,Gabriele Alexe,Rameen Beroukhim,Scott L. Carter,Derek Y. Chiang,Josh Gould,Supriya Gupta,Josh Korn,Craig H. Mermel,Jill P. Mesirov,Stefano Monti,Huy V. Nguyen,Melissa Parkin,Michael R. Reich,Nicolas Stransky,Barbara A. Weir,Levi A. Garraway,Todd R. Golub,Matthew Meyerson,Lynda Chin,Alexei Protopopov,Jianhua Zhang,Ilana Perna,Sandy Aronson,Narayanan Sathiamoorthy,Georgia Ren,Jun Yao,W. Ruprecht Wiedemeyer,Hyun Soo Kim,Won Kong Sek,Yonghong Xiao,Isaac S. Kohane,Jon G. Seidman,Peter J. Park,Raju Kucherlapati,Peter W. Laird,Leslie Cope,James G. Herman,Daniel J. Weisenberger,Fei Pan,David Van Den Berg,Leander Van Neste,Mi Yi Joo,Kornel E. Schuebel,Stephen B. Baylin,Devin Absher,Jun Li,Audrey Southwick,Shannon T. Brady,Amita Aggarwal,Tisha Chung,Gavin Sherlock,James D. Brooks,Richard M. Myers,Paul T. Spellman,Elizabeth Purdom,Lakshmi Jakkula,Anna Lapuk,Henry Marr,Shannon Dorton,Gi Choi Yoon,Ju Han,Amrita Ray,Victoria Wang,Steffen Durinck,Mark D. Robinson,Nicholas J. Wang,Karen Vranizan,Vivian Peng,Eric Van Name,Gerald V. Fontenay,John Ngai,John G. Conboy,Bahram Parvin,Heidi S. Feiler,Terence P. Speed,Terence P. Speed,Joe W. Gray,Cameron Brennan,Nicholas D. Socci,Adam B. Olshen,Barry S. Taylor,Barry S. Taylor,Alex E. Lash,Nikolaus Schultz,Boris Reva,Yevgeniy Antipin,Alexey Stukalov,Benjamin Gross,Ethan Cerami,Qing Wang Wei,Li-Xuan Qin,Venkatraman E. Seshan,Liliana Villafania,Magali Cavatore,Laetitia Borsu,Agnes Viale,William L. Gerald,Chris Sander,Marc Ladanyi,Charles M. Perou,D. Neil Hayes,Michael D. Topal,Katherine A. Hoadley,Yuan Qi,Sai Balu,Yan Shi,Junyuan Wu,Robert Penny,Michael L. Bittner,Troy Shelton,Elizabeth Lenkiewicz,Scott Morris,Debbie Beasley,Sheri Sanders,Ari B. Kahn,Robert Sfeir,Jessica Chen,David Nassau,Larry Feng,Erin Hickey,Anna D. Barker,Daniela S. Gerhard,Joseph G. Vockley,Carolyn C. Compton,Jim Vaught,Peter Fielding,Martin L. Ferguson,Carl F. Schaefer,Jinghui Zhang,Subhashree Madhavan,Kenneth H. Buetow,Francis S. Collins,Peter J. Good,Mark S. Guyer,Brad Ozenberger,Jane Peterson,Elizabeth J. Thomson +233 more
TL;DR: The interim integrative analysis of DNA copy number, gene expression and DNA methylation aberrations in 206 glioblastomas reveals a link between MGMT promoter methylation and a hypermutator phenotype consequent to mismatch repair deficiency in treated gliobeasts, demonstrating that it can rapidly expand knowledge of the molecular basis of cancer.
Journal ArticleDOI
Widespread and tissue specific age-related DNA methylation changes in mice
Shinji Maegawa,George Hinkal,Hyun Soo Kim,Hyun Soo Kim,Lanlan Shen,Li Zhang,Jiexin Zhang,Nianxiang Zhang,Shoudan Liang,Lawrence A. Donehower,Jean Pierre J. Issa +10 more
TL;DR: The findings demonstrate a surprisingly high rate of hyper- and hypomethylation as a function of age in normal mouse small intestine tissues and a strong tissue-specificity to the process, which concludes that epigenetic deregulation is a common feature of aging in mammals.
Journal ArticleDOI
DNA methylation predicts recurrence from resected stage III proximal colon cancer
Joong Bae Ahn,Woonbok Chung,Osamu Maeda,Osamu Maeda,Sang Joon Shin,Hyun Soo Kim,Hyun Soo Kim,Hyun Chul Chung,Nam Kyu Kim,Jean Pierre J. Issa +9 more
TL;DR: In colorectal cancer (CRC), DNA methylation anomalies define distinct subgroups termed CpG island methylator phenotype 1 (CIMP1), CIMp2, and CIMP‐negative, and the role of this classification in predicting recurrence and disease‐free survival (DFS) in resected stage III CRC was evaluated.
Journal ArticleDOI
Sensitive and Specific Detection of Early Gastric Cancer with DNA Methylation Analysis of Gastric Washes
Yoshiyuki Watanabe,Yoshiyuki Watanabe,Hyun Soo Kim,Hyun Soo Kim,Ryan J. Castoro,Woonbok Chung,Marcos R. Estecio,Kimie Kondo,Yi Guo,Saira Ahmed,Minoru Toyota,Fumio Itoh,Ki Tae Suk,Mee Yon Cho,Lanlan Shen,Jaroslav Jelinek,Jean Pierre J. Issa +16 more
TL;DR: Findings suggest MINT25 is a sensitive and specific marker for screening in gastric cancer, and a new method for Gastric cancer detection by DNA methylation in Gastric washes is developed.
Journal ArticleDOI
Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts.
Xing Yi Woo,Jessica Giordano,Anuj Srivastava,Zi-Ming Zhao,Michael Lloyd,Roebi de Bruijn,Yun-Suhk Suh,Rajesh Patidar,Li Chen,Sandra D. Scherer,Matthew H. Bailey,Chieh-Hsiang Yang,Emilio Cortes-Sanchez,Yuanxin Xi,Jing Wang,Jayamanna Wickramasinghe,Andrew V. Kossenkov,Vito W. Rebecca,Hua Sun,R. Jay Mashl,Sherri R. Davies,Ryan Jeon,Christian Frech,Jelena Randjelovic,Jacqueline Rosains,Francesco Galimi,Andrea Bertotti,Adam Lafferty,Alice C. O’Farrell,Elodie Modave,Diether Lambrechts,Petra ter Brugge,Violeta Serra,Elisabetta Marangoni,Rania El Botty,Hyun Soo Kim,Jong Il Kim,Han-Kwang Yang,Charles Lee,Dennis A. Dean,Brandi N. Davis-Dusenbery,Yvonne A. Evrard,James H. Doroshow,Alana L. Welm,Bryan E. Welm,Michael T. Lewis,Bingliang Fang,Jack A. Roth,Funda Meric-Bernstam,Meenhard Herlyn,Michael A. Davies,Li Ding,Shunqiang Li,Ramaswamy Govindan,Claudio Isella,Jeffrey A. Moscow,Livio Trusolino,Annette T. Byrne,Jos Jonkers,Carol J. Bult,Enzo Medico,Jeffrey H. Chuang +61 more
TL;DR: In this paper, the authors exhaustively analyzed copy number alterations in 1,451 PDX and matched patient tumor (PT) samples from 509 PDX models, and they showed strong CNA conservation from PTs through late-passage PDXs.