J
Jörg Vogel
Researcher at University of Würzburg
Publications - 244
Citations - 31250
Jörg Vogel is an academic researcher from University of Würzburg. The author has contributed to research in topics: RNA & Gene. The author has an hindex of 89, co-authored 216 publications receiving 26988 citations. Previous affiliations of Jörg Vogel include Humboldt State University & Uppsala University.
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Journal ArticleDOI
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs.
TL;DR: Deep sequencing of Hfq‐bound transcripts from multiple stages of growth of Salmonella typhimurium revealed a plethora of new small RNA species from within mRNA loci, including DapZ, which overlaps with the 3′ region of the biosynthetic gene, dapB.
Journal ArticleDOI
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Yuxiang Jiang,Tal Ronnen Oron,Wyatt T. Clark,Asma R. Bankapur,Daniel D'Andrea,Rosalba Lepore,Christopher S. Funk,Indika Kahanda,Karin Verspoor,Asa Ben-Hur,Da Chen Emily Koo,Duncan Penfold-Brown,Dennis Shasha,Noah Youngs,Richard Bonneau,Alexandra Lin,Sayed Mohammad Ebrahim Sahraeian,Pier Luigi Martelli,Giuseppe Profiti,Rita Casadio,Renzhi Cao,Zhaolong Zhong,Jianlin Cheng,Adrian M. Altenhoff,Adrian M. Altenhoff,Nives Škunca,Nives Škunca,Christophe Dessimoz,Christophe Dessimoz,Christophe Dessimoz,Tunca Doğan,Kai Hakala,Suwisa Kaewphan,Farrokh Mehryary,Tapio Salakoski,Filip Ginter,Hai Fang,Ben Smithers,Matt E. Oates,Julian Gough,Petri Törönen,Patrik Koskinen,Liisa Holm,Ching-Tai Chen,Wen-Lian Hsu,Kevin Bryson,Domenico Cozzetto,Federico Minneci,David T. Jones,Samuel Chapman,Dukka Bkc,Ishita K. Khan,Daisuke Kihara,Dan Ofer,Nadav Rappoport,Amos Stern,Elena Cibrian-Uhalte,Paul Denny,Rebecca E. Foulger,Reija Hieta,Duncan Legge,Ruth C. Lovering,Michele Magrane,Anna N. Melidoni,Prudence Mutowo-Meullenet,Klemens Pichler,Aleksandra Shypitsyna,Biao Li,Pooya Zakeri,Pooya Zakeri,Sarah ElShal,Sarah ElShal,Léon-Charles Tranchevent,Léon-Charles Tranchevent,Sayoni Das,Natalie L. Dawson,David A. Lee,Jonathan G. Lees,Ian Sillitoe,Prajwal Bhat,Tamás Nepusz,Alfonso E. Romero,Rajkumar Sasidharan,Haixuan Yang,Alberto Paccanaro,Jesse Gillis,Adriana E. Sedeno-Cortes,Paul Pavlidis,Shou Feng,Juan Miguel Cejuela,Tatyana Goldberg,Tobias Hamp,Lothar Richter,Asaf Salamov,Toni Gabaldón,Toni Gabaldón,Marina Marcet-Houben,Fran Supek,Fran Supek,Qingtian Gong,Wei Ning,Yuanpeng Zhou,Weidong Tian,Marco Falda,Paolo Fontana,Enrico Lavezzo,Stefano Toppo,Carlo Ferrari,Manuel Giollo,Damiano Piovesan,Silvio C. E. Tosatto,Angela del Pozo,José M. Fernández,Paolo Maietta,Alfonso Valencia,Michael L. Tress,Alfredo Benso,Stefano Di Carlo,Gianfranco Politano,Alessandro Savino,Hafeez Ur Rehman,Matteo Re,Marco Mesiti,Giorgio Valentini,Joachim W. Bargsten,Aalt D. J. van Dijk,Branislava Gemovic,Sanja Glisic,Vladmir Perovic,Veljko Veljkovic,Nevena Veljkovic,Danillo C Almeida-E-Silva,Ricardo Z. N. Vêncio,Malvika Sharan,Jörg Vogel,Lakesh Kansakar,Shanshan Zhang,Slobodan Vucetic,Zheng Wang,Michael J.E. Sternberg,Mark N. Wass,Rachael P. Huntley,Maria Jesus Martin,Claire O'Donovan,Peter N. Robinson,Yves Moreau,Anna Tramontano,Patricia C. Babbitt,Steven E. Brenner,Michal Linial,Christine A. Orengo,Burkhard Rost,Casey S. Greene,Sean D. Mooney,Iddo Friedberg,Iddo Friedberg,Predrag Radivojac +156 more
TL;DR: The second critical assessment of functional annotation (CAFA), a timed challenge to assess computational methods that automatically assign protein function, was conducted by as mentioned in this paper. But the results of the CAFA2 assessment are limited.
Journal ArticleDOI
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA
Klas I. Udekwu,Fabien Darfeuille,Jörg Vogel,Johan Reimegård,Erik Holmqvist,E. Gerhart H. Wagner +5 more
TL;DR: It is proposed that MicA, when present at high levels, blocks ribosome binding at the ompA translation start site, which-in line with previous work-secondarily facilitates RNase E cleavage and subsequent mRNA decay.
Journal ArticleDOI
β-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity
Arnaud Gutierrez,Luisa Laureti,S. Crussard,Heni Abida,Alexandro Rodríguez-Rojas,Jesús Blázquez,Zeynep Baharoglu,Didier Mazel,F. Darfeuille,Jörg Vogel,Ivan Matic +10 more
TL;DR: It is shown that mutagenesis induced by subinhibitory concentrations of antibiotics is a genetically controlled process that should be taken into consideration for the development of more efficient antimicrobial therapeutic strategies.
Journal ArticleDOI
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
TL;DR: This work reports that the Hfq-associated MicC sRNA silences Salmonella typhimurium ompD mRNA via a ≤12-bp RNA duplex within the CDS (codons 23–26) that is essential and sufficient for repression.