D
Douglas W. Bryant
Researcher at Donald Danforth Plant Science Center
Publications - 27
Citations - 5163
Douglas W. Bryant is an academic researcher from Donald Danforth Plant Science Center. The author has contributed to research in topics: Genome & Sequence assembly. The author has an hindex of 17, co-authored 26 publications receiving 4599 citations. Previous affiliations of Douglas W. Bryant include Research Triangle Park & Oregon State University.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
The genome of woodland strawberry ( Fragaria vesca )
Vladimir Shulaev,Daniel J. Sargent,Ross N. Crowhurst,Todd C. Mockler,Otto Folkerts,Arthur L. Delcher,Pankaj Jaiswal,Keithanne Mockaitis,Aaron Liston,Shrinivasrao P. Mane,Paul Burns,Thomas M. Davis,Janet P. Slovin,Nahla V. Bassil,Roger P. Hellens,Clive Evans,Tim Harkins,Chinnappa D. Kodira,Brian Desany,Oswald Crasta,Roderick V. Jensen,Andrew C. Allan,Andrew C. Allan,Todd P. Michael,João C. Setubal,Jean-Marc Celton,D. Jasper G. Rees,Kelly P. Williams,Sarah H. Holt,Juan Jairo Ruiz Rojas,Mithu Chatterjee,Bo Liu,Herman Silva,Lee A. Meisel,Avital Adato,Sergei A. Filichkin,Michela Troggio,Roberto Viola,Tia-Lynn Ashman,Hao Wang,Palitha Dharmawardhana,Justin Elser,Rajani Raja,Henry D. Priest,Douglas W. Bryant,Samuel E. Fox,Scott A. Givan,Larry J. Wilhelm,Sushma Naithani,Alan Christoffels,David Y. Salama,Jade Carter,Elena Lopez Girona,Anna Zdepski,Wenqin Wang,Randall A. Kerstetter,Wilfried Schwab,Schuyler S. Korban,Jahn Davik,Amparo Monfort,Beatrice Denoyes-Rothan,Pere Arús,Ron Mittler,Barry S. Flinn,Asaph Aharoni,Jeffrey L. Bennetzen,Steven L. Salzberg,Allan W. Dickerman,Riccardo Velasco,Mark Borodovsky,Richard E. Veilleux,Kevin M. Folta +71 more
TL;DR: New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted, and macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes.
Journal ArticleDOI
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
Sergei A. Filichkin,Henry D. Priest,Scott A. Givan,Rongkun Shen,Douglas W. Bryant,Samuel E. Fox,Weng-Keen Wong,Todd C. Mockler +7 more
TL;DR: The results suggest that like in animals, NMD and RUST may be widespread in plants and may play important roles in regulating gene expression.
Journal ArticleDOI
Architecture and evolution of a minute plant genome
Enrique Ibarra-Laclette,Eric Lyons,Gustavo Hernández-Guzmán,Gustavo Hernández-Guzmán,Claudia Anahí Pérez-Torres,Lorenzo Carretero-Paulet,Tien-Hao Chang,Tianying Lan,Tianying Lan,Andreanna J. Welch,María Jazmín Abraham Juárez,June Simpson,Araceli Fernández-Cortes,Mario A. Arteaga-Vazquez,Elsa Góngora-Castillo,Gustavo Acevedo-Hernández,Stephan C. Schuster,Stephan C. Schuster,Heinz Himmelbauer,André E. Minoche,André E. Minoche,Sen Xu,Michael Lynch,Araceli Oropeza-Aburto,Sergio Alan Cervantes-Pérez,María De Jesús Ortega-Estrada,Jacob Israel Cervantes-Luevano,Todd P. Michael,Todd C. Mockler,Douglas W. Bryant,Alfredo Herrera-Estrella,Victor A. Albert,Luis Herrera-Estrella +32 more
TL;DR: The compressed architecture of the U. gibba genome indicates that a small fraction of intergenic DNA, with few or no active retrotransposons, is sufficient to regulate and integrate all the processes required for the development and reproduction of a complex organism.
Journal ArticleDOI
Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm.
Ignazio Verde,Nahla V. Bassil,Simone Scalabrin,Barbara Gilmore,Cindy Lawley,Ksenija Gasic,Diego Micheletti,Umesh R. Rosyara,Federica Cattonaro,Elisa Vendramin,Dorrie Main,Valeria Aramini,Andrea L. Blas,Todd C. Mockler,Todd C. Mockler,Douglas W. Bryant,Larry J. Wilhelm,Michela Troggio,Bryon Sosinski,Maria José Aranzana,Pere Arús,Amy Iezzoni,Michele Morgante,Cameron Peace +23 more
TL;DR: The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits.