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Clive Evans
Researcher at Virginia Bioinformatics Institute
Publications - 19
Citations - 2783
Clive Evans is an academic researcher from Virginia Bioinformatics Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 16, co-authored 19 publications receiving 2601 citations. Previous affiliations of Clive Evans include Virginia Tech.
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Journal ArticleDOI
The genome of woodland strawberry ( Fragaria vesca )
Vladimir Shulaev,Daniel J. Sargent,Ross N. Crowhurst,Todd C. Mockler,Otto Folkerts,Arthur L. Delcher,Pankaj Jaiswal,Keithanne Mockaitis,Aaron Liston,Shrinivasrao P. Mane,Paul Burns,Thomas M. Davis,Janet P. Slovin,Nahla V. Bassil,Roger P. Hellens,Clive Evans,Tim Harkins,Chinnappa D. Kodira,Brian Desany,Oswald Crasta,Roderick V. Jensen,Andrew C. Allan,Andrew C. Allan,Todd P. Michael,João C. Setubal,Jean-Marc Celton,D. Jasper G. Rees,Kelly P. Williams,Sarah H. Holt,Juan Jairo Ruiz Rojas,Mithu Chatterjee,Bo Liu,Herman Silva,Lee A. Meisel,Avital Adato,Sergei A. Filichkin,Michela Troggio,Roberto Viola,Tia-Lynn Ashman,Hao Wang,Palitha Dharmawardhana,Justin Elser,Rajani Raja,Henry D. Priest,Douglas W. Bryant,Samuel E. Fox,Scott A. Givan,Larry J. Wilhelm,Sushma Naithani,Alan Christoffels,David Y. Salama,Jade Carter,Elena Lopez Girona,Anna Zdepski,Wenqin Wang,Randall A. Kerstetter,Wilfried Schwab,Schuyler S. Korban,Jahn Davik,Amparo Monfort,Beatrice Denoyes-Rothan,Pere Arús,Ron Mittler,Barry S. Flinn,Asaph Aharoni,Jeffrey L. Bennetzen,Steven L. Salzberg,Allan W. Dickerman,Riccardo Velasco,Mark Borodovsky,Richard E. Veilleux,Kevin M. Folta +71 more
TL;DR: New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted, and macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes.
Journal ArticleDOI
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Rami A. Dalloul,Julie A. Long,Aleksey V. Zimin,Luqman Aslam,Kathryn Beal,Le Ann Blomberg,Pascal Bouffard,David W. Burt,Oswald Crasta,Richard P. M. A. Crooijmans,Kristal L. Cooper,Roger A. Coulombe,Supriyo De,Mary E. Delany,Jerry B. Dodgson,Jennifer J Dong,Clive Evans,Karin M. Frederickson,Paul Flicek,Liliana Florea,Otto Folkerts,Martien A. M. Groenen,Tim Harkins,Javier Herrero,Steve Hoffmann,Hendrik-Jan Megens,Andrew Jiang,Pieter J. de Jong,Peter K. Kaiser,Heebal Kim,Kyu-Won Kim,Sungwon Kim,David Langenberger,Mi-Kyung Lee,Taeheon Lee,Shrinivasrao P. Mane,Guillaume Marçais,Manja Marz,Manja Marz,A. P. McElroy,Thero Modise,Mikhail Nefedov,Cedric Notredame,Ian R. Paton,William S. Payne,Geo Pertea,Dennis Prickett,Daniela Puiu,Dan Qioa,Emanuele Raineri,Magali Ruffier,Steven L. Salzberg,Michael C. Schatz,Chantel F. Scheuring,Carl J. Schmidt,Steven Schroeder,Stephen M. J. Searle,Edward J. Smith,Jacqueline Smith,Tad S. Sonstegard,Peter F. Stadler,Hakim Tafer,Hakim Tafer,Zhijian Jake Tu,Curtis P. Van Tassell,Albert J. Vilella,Kelly P. Williams,James A. Yorke,Liqing Zhang,Hong-Bin Zhang,Xiaojun Zhang,Yang Zhang,Kent M. Reed +72 more
TL;DR: The combined application of next-generation sequencing platforms has provided an economical approach to unlocking the potential of the turkey genome.
Journal ArticleDOI
miR-99 family of MicroRNAs suppresses the expression of prostate-specific antigen and prostate cancer cell proliferation.
Dandan Sun,Yong Sun Lee,Ankit Malhotra,Hak Kyun Kim,Mirela Matecic,Clive Evans,Roderick V. Jensen,Christopher A. Moskaluk,Anindya Dutta +8 more
TL;DR: It is determined that PSA is posttranscriptionally regulated by the miR-99 family members, at least partially, by repression of SMARCA5.
Journal ArticleDOI
Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome.
Carol A. Gilchrist,Eric R. Houpt,Nino Trapaidze,Zhangjun Fei,Oswald Crasta,Amon Asgharpour,Clive Evans,Susan Martino-Catt,Duza J. Baba,Suzanne Stroup,Shinjiro Hamano,Gretchen M. Ehrenkaufer,Mami Okada,Upinder Singh,Tomoyoshi Nozaki,Barbara J. Mann,William A. Petri +16 more
TL;DR: The first genome-wide analysis of the transcriptome of E. histolytica demonstrated that the vast majority of genes are transcribed in trophozoites, and that in the host intestine trophozites altered the expression of mRNAs for genes implicated in metabolism, oxygen defense, cell signaling, virulence, antibacterial activity, and DNA binding.
Journal ArticleDOI
Microbial diversity in saliva of oral squamous cell carcinoma
Smruti Pushalkar,Shrinivasrao P. Mane,Xiaojie Ji,Yihong Li,Clive Evans,Oswald Crasta,Douglas E. Morse,Robert J. Meagher,Anup K. Singh,Deepak Saxena +9 more
TL;DR: The species diversity estimates obtained with abundance-based coverage estimators and Chao1 were greater than published analyses of other microbial profiles from the oral cavity.