V
Victor M. Markowitz
Researcher at Lawrence Berkeley National Laboratory
Publications - 21
Citations - 20530
Victor M. Markowitz is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: IMG & Genome. The author has an hindex of 17, co-authored 21 publications receiving 18415 citations. Previous affiliations of Victor M. Markowitz include United States Department of Energy.
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Journal ArticleDOI
The integrated microbial genomes (IMG) system
Victor M. Markowitz,Frank Korzeniewski,Krishna Palaniappan,Ernest Szeto,Greg Werner,Anu Padki,Xueling Zhao,Inna Dubchak,Philip Hugenholtz,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Natalia Ivanova,Nikos C. Kyrpides +13 more
TL;DR: The integrated microbial genomes system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute that contains both draft and complete JGI genomes integrated with other publicly available microbial genomes of all three domains of life.
Journal ArticleDOI
IMG/M: a data management and analysis system for metagenomes
Victor M. Markowitz,Natalia Ivanova,Ernest Szeto,Krishna Palaniappan,Ken Chu,Daniel Dalevi,I-Min A. Chen,Yuri Grechkin,Inna Dubchak,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Philip Hugenholtz,Nikos C. Kyrpides +13 more
TL;DR: IMG/M as mentioned in this paper is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI).
Journal Article
IMG ER: A System for Microbial Genome Annotation Expert Review and Curation
TL;DR: An Expert Review (ER) version of the Integrated Microbial Genomes (IMG) system, with the goal of supporting systematic and efficient revision of microbial genome annotations, is developed.
Journal ArticleDOI
IMG/M 4 version of the integrated metagenome comparative analysis system.
Victor M. Markowitz,I-Min A. Chen,Ken Chu,Ernest Szeto,Krishna Palaniappan,Manoj Pillay,Anna Ratner,Jinghua Huang,Ioanna Pagani,Susannah G. Tringe,Marcel Huntemann,Konstantinos Billis,Neha Varghese,Kristin Tennessen,Konstantinos Mavromatis,Amrita Pati,Natalia Ivanova,Nikos C. Kyrpides +17 more
TL;DR: Since the last report published in the 2012 NAR Database Issue, IMG/M’s database architecture, annotation and data integration pipelines and analysis tools have been extended to copewith the rapid growth in the number and size of metagenomes handled by the system.
Journal ArticleDOI
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
Nikos C. Kyrpides,Philip Hugenholtz,Jonathan A. Eisen,Tanja Woyke,Markus Göker,Charles Thomas Parker,Rudolf Amann,Brian Beck,Patrick S. G. Chain,Jongsik Chun,Rita R. Colwell,Antoine Danchin,Peter Dawyndt,Tom Dedeurwaerdere,Edward F. DeLong,John C. Detter,Paul De Vos,Timothy J. Donohue,Xiu-Zhu Dong,Dusko Ehrlich,Claire M. Fraser,Richard A. Gibbs,Jack A. Gilbert,Paul Gilna,Frank Oliver Glöckner,Janet K. Jansson,Jay D. Keasling,Rob Knight,David P. Labeda,Alla Lapidus,Jung-Sook Lee,Wen-Jun Li,Juncai Ma,Victor M. Markowitz,Edward R. B. Moore,Mark Morrison,Folker Meyer,Karen E. Nelson,Moriya Ohkuma,Christos A. Ouzounis,Norman R. Pace,Julian Parkhill,Nan Qin,Ramon Rosselló-Móra,Johannes Sikorski,David Smith,M L Sogin,Rick Stevens,Uli Stingl,Ken-ichiro Suzuki,Dorothea Taylor,James M. Tiedje,Brian J. Tindall,Michael Wagner,George M. Weinstock,Jean Weissenbach,Owen White,Jun Wang,Lixin Zhang,Yu Guang Zhou,Dawn Field,William B. Whitman,George M. Garrity,Hans-Peter Klenk +63 more
TL;DR: This article proposed a systematic effort to produce a comprehensive genomic catalog of all cultured Bacteria and Archaea by sequencing, where available, the type strain of each species with a validly published name.