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Yogesh Paudel
Researcher at Wageningen University and Research Centre
Publications - 19
Citations - 2450
Yogesh Paudel is an academic researcher from Wageningen University and Research Centre. The author has contributed to research in topics: Domestication & Domestic pig. The author has an hindex of 12, co-authored 19 publications receiving 2114 citations. Previous affiliations of Yogesh Paudel include Osaka University & Hoffmann-La Roche.
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Journal ArticleDOI
Analyses of pig genomes provide insight into porcine demography and evolution
Martien A. M. Groenen,Alan Archibald,Hirohide Uenishi,Christopher K. Tuggle,Yasuhiro Takeuchi,Max F. Rothschild,Claire Rogel-Gaillard,Chankyu Park,Denis Milan,Hendrik-Jan Megens,Shengting Li,Denis M. Larkin,Heebal Kim,Laurent A. F. Frantz,Mario Caccamo,Hyeonju Ahn,Bronwen Aken,Anna Anselmo,Christian Anthon,Loretta Auvil,Bouabid Badaoui,Craig W. Beattie,Christian Bendixen,Daniel Berman,Frank Blecha,Jonas Blomberg,Lars Bolund,Mirte Bosse,Sara Botti,Zhan Bujie,Megan Bystrom,Boris Capitanu,Denise Carvalho-Silva,Patrick Chardon,Celine Chen,Ryan Cheng,Sang-Haeng Choi,William Chow,Richard Clark,C M Clee,Richard P. M. A. Crooijmans,Harry D. Dawson,Patrice Dehais,Fioravante De Sapio,Bert Dibbits,Nizar Drou,Zhi-Qiang Du,Kellye Eversole,João Fadista,João Fadista,Susan Fairley,Thomas Faraut,Geoffrey J. Faulkner,Geoffrey J. Faulkner,Katie E. Fowler,Merete Fredholm,Eric Fritz,James G. R. Gilbert,Elisabetta Giuffra,Elisabetta Giuffra,Jan Gorodkin,Darren K. Griffin,Jennifer Harrow,Alexander Hayward,Kerstin Howe,Zhi-Liang Hu,Sean Humphray,Sean Humphray,Toby Hunt,Henrik Hornshøj,Jin-Tae Jeon,Patric Jern,Matthew Jones,Jerzy Jurka,Hiroyuki Kanamori,Ronan Kapetanovic,Jaebum Kim,Jaebum Kim,Jae-Hwan Kim,Kyu-Won Kim,Tae-Hun Kim,Greger Larson,Kyooyeol Lee,Kyung-Tai Lee,Richard M. Leggett,Harris A. Lewin,Yingrui Li,Wan Sheng Liu,Jane E. Loveland,Yao Lu,Joan K. Lunney,Jian Ma,Ole Madsen,Katherine M. Mann,Katherine M. Mann,Lucy Matthews,Stuart McLaren,Takeya Morozumi,Michael P. Murtaugh,Jitendra Narayan,Dinh Truong Nguyen,Peixiang Ni,Song-Jung Oh,Suneel Kumar Onteru,Frank Panitz,Eung-Woo Park,Hong-Seog Park,Géraldine Pascal,Yogesh Paudel,Miguel Pérez-Enciso,Ricardo H. Ramirez-Gonzalez,James M. Reecy,Sandra L. Rodriguez-Zas,Gary A. Rohrer,Lauretta A. Rund,Yongming Sang,Kyle M. Schachtschneider,Joshua G. Schraiber,John C. Schwartz,Linda Scobie,Carol Scott,Stephen M. J. Searle,Bertrand Servin,Bruce R. Southey,Göran O. Sperber,Peter F. Stadler,Jonathan V. Sweedler,Hakim Tafer,Bo Thomsen,Rashmi Wali,Jian Wang,Jun Wang,Simon D. M. White,Xun Xu,Martine Yerle,Guojie Zhang,Jianguo Zhang,Jie Zhang,Shuhong Zhao,Jane Rogers,Carol Churcher,Lawrence B. Schook +141 more
TL;DR: The assembly and analysis of the genome sequence of a female domestic Duroc pig and a comparison with the genomes of wild and domestic pigs from Europe and Asia reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago.
Journal ArticleDOI
Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape.
Mirte Bosse,Hendrik-Jan Megens,Ole Madsen,Yogesh Paudel,Laurent A. F. Frantz,Lawrence B. Schook,Richard P. M. A. Crooijmans,Martien A. M. Groenen +7 more
TL;DR: An in-depth study of genomic variation based on three different parameters: nucleotide diversity outside ROHs, the number of R OHs in the genome, and the average ROH size, which shows an unequal genomic ROH distribution.
Journal ArticleDOI
Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes.
Laurent A. F. Frantz,Laurent A. F. Frantz,Joshua G. Schraiber,Ole Madsen,Hendrik-Jan Megens,Alex Cagan,Mirte Bosse,Yogesh Paudel,Richard P. M. A. Crooijmans,Greger Larson,Martien A. M. Groenen +10 more
TL;DR: It is argued that recurrent selection for domestic traits likely counteracted the homogenizing effect of gene flow from wild boars and created 'islands of domestication' in the genome.
Journal ArticleDOI
Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
Laurent A. F. Frantz,Joshua G. Schraiber,Ole Madsen,Hendrik-Jan Megens,Mirte Bosse,Yogesh Paudel,Gono Semiadi,Erik Meijaard,Ning Li,Richard P. M. A. Crooijmans,Alan Archibald,Montgomery Slatkin,Lawrence B. Schook,Greger Larson,Martien A. M. Groenen +14 more
TL;DR: This case study demonstrates that genomics is a powerful tool to decipher the evolutionary history of a genus, and reveals the complexity of the process of speciation in island Southeast Asia, by sequencing and analyzing the genomes of 10 wild pigs.
Journal ArticleDOI
Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression
Mirte Bosse,Hendrik-Jan Megens,Laurent A. F. Frantz,Ole Madsen,Greger Larson,Yogesh Paudel,N. Duijvesteijn,Barbara Harlizius,Yanick Hagemeijer,Richard P. M. A. Crooijmans,Martien A. M. Groenen +10 more
TL;DR: It is demonstrated that increased fertility was an important breeding goal for early nineteenth century pig farmers, and that Asian variants of genes related to this trait were preferentially selected during the development of modern European pig breeds.