T
Thomas Faraut
Researcher at University of Toulouse
Publications - 59
Citations - 4685
Thomas Faraut is an academic researcher from University of Toulouse. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 24, co-authored 54 publications receiving 4065 citations. Previous affiliations of Thomas Faraut include Institut national de la recherche agronomique & Paul Sabatier University.
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Journal ArticleDOI
Analyses of pig genomes provide insight into porcine demography and evolution
Martien A. M. Groenen,Alan Archibald,Hirohide Uenishi,Christopher K. Tuggle,Yasuhiro Takeuchi,Max F. Rothschild,Claire Rogel-Gaillard,Chankyu Park,Denis Milan,Hendrik-Jan Megens,Shengting Li,Denis M. Larkin,Heebal Kim,Laurent A. F. Frantz,Mario Caccamo,Hyeonju Ahn,Bronwen Aken,Anna Anselmo,Christian Anthon,Loretta Auvil,Bouabid Badaoui,Craig W. Beattie,Christian Bendixen,Daniel Berman,Frank Blecha,Jonas Blomberg,Lars Bolund,Mirte Bosse,Sara Botti,Zhan Bujie,Megan Bystrom,Boris Capitanu,Denise Carvalho-Silva,Patrick Chardon,Celine Chen,Ryan Cheng,Sang-Haeng Choi,William Chow,Richard Clark,C M Clee,Richard P. M. A. Crooijmans,Harry D. Dawson,Patrice Dehais,Fioravante De Sapio,Bert Dibbits,Nizar Drou,Zhi-Qiang Du,Kellye Eversole,João Fadista,João Fadista,Susan Fairley,Thomas Faraut,Geoffrey J. Faulkner,Geoffrey J. Faulkner,Katie E. Fowler,Merete Fredholm,Eric Fritz,James G. R. Gilbert,Elisabetta Giuffra,Elisabetta Giuffra,Jan Gorodkin,Darren K. Griffin,Jennifer Harrow,Alexander Hayward,Kerstin Howe,Zhi-Liang Hu,Sean Humphray,Sean Humphray,Toby Hunt,Henrik Hornshøj,Jin-Tae Jeon,Patric Jern,Matthew Jones,Jerzy Jurka,Hiroyuki Kanamori,Ronan Kapetanovic,Jaebum Kim,Jaebum Kim,Jae-Hwan Kim,Kyu-Won Kim,Tae-Hun Kim,Greger Larson,Kyooyeol Lee,Kyung-Tai Lee,Richard M. Leggett,Harris A. Lewin,Yingrui Li,Wan Sheng Liu,Jane E. Loveland,Yao Lu,Joan K. Lunney,Jian Ma,Ole Madsen,Katherine M. Mann,Katherine M. Mann,Lucy Matthews,Stuart McLaren,Takeya Morozumi,Michael P. Murtaugh,Jitendra Narayan,Dinh Truong Nguyen,Peixiang Ni,Song-Jung Oh,Suneel Kumar Onteru,Frank Panitz,Eung-Woo Park,Hong-Seog Park,Géraldine Pascal,Yogesh Paudel,Miguel Pérez-Enciso,Ricardo H. Ramirez-Gonzalez,James M. Reecy,Sandra L. Rodriguez-Zas,Gary A. Rohrer,Lauretta A. Rund,Yongming Sang,Kyle M. Schachtschneider,Joshua G. Schraiber,John C. Schwartz,Linda Scobie,Carol Scott,Stephen M. J. Searle,Bertrand Servin,Bruce R. Southey,Göran O. Sperber,Peter F. Stadler,Jonathan V. Sweedler,Hakim Tafer,Bo Thomsen,Rashmi Wali,Jian Wang,Jun Wang,Simon D. M. White,Xun Xu,Martine Yerle,Guojie Zhang,Jianguo Zhang,Jie Zhang,Shuhong Zhao,Jane Rogers,Carol Churcher,Lawrence B. Schook +141 more
TL;DR: The assembly and analysis of the genome sequence of a female domestic Duroc pig and a comparison with the genomes of wild and domestic pigs from Europe and Asia reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago.
Journal ArticleDOI
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
Hélène Badouin,Jérôme Gouzy,Christopher J. Grassa,Christopher J. Grassa,Florent Murat,S. Evan Staton,Ludovic Cottret,Christine Lelandais-Brière,Gregory L. Owens,Sébastien Carrère,Baptiste Mayjonade,Ludovic Legrand,Navdeep Gill,Nolan C. Kane,Nolan C. Kane,John E. Bowers,Sariel Hübner,Sariel Hübner,Arnaud Bellec,Aurélie Bérard,Hélène Bergès,Nicolas Blanchet,Marie Claude Boniface,Dominique Brunel,Olivier Catrice,Nadia Chaidir,Nadia Chaidir,Clotilde Claudel,Cécile Donnadieu,Thomas Faraut,Ghislain Fievet,Nicolas Helmstetter,Matthew G. King,Matthew G. King,Steven J. Knapp,Zhao Lai,Marie-Christine Le Paslier,Yannick Lippi,Lolita Lorenzon,Jennifer R. Mandel,Gwenola Marage,Gwenaëlle Marchand,Elodie Marquand,Emmanuelle Bret-Mestries,Evan Morien,Savithri U. Nambeesan,Thuy Tien Nguyen,Thuy Tien Nguyen,Prune Pegot-Espagnet,Nicolas Pouilly,Frances Raftis,Erika Sallet,Thomas Schiex,Justine Thomas,Céline Vandecasteele,D. Varès,Felicity Vear,Sonia Vautrin,Martin Crespi,Brigitte Mangin,John M. Burke,Jérôme Salse,Stéphane Muños,Patrick Vincourt,Loren H. Rieseberg,Loren H. Rieseberg,Nicolas B. Langlade +66 more
TL;DR: It is found that the genomic architecture of flowering time has been shaped by the most recent whole-genome duplication, which suggests that ancient paralogues can remain in the same regulatory networks for dozens of millions of years.
Journal ArticleDOI
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
Yang Dong,Yang Dong,Min Xie,Yu Jiang,Yu Jiang,Nianqing Xiao,Xiaoyong Du,Wenguang Zhang,Wenguang Zhang,Gwenola Tosser-Klopp,Jinhuan Wang,Shuang Yang,Jie Liang,Wenbin Chen,Jing Chen,Peng Zeng,Yong Hou,Chao Bian,Shengkai Pan,Yuxiang Li,Xin Liu,Wenliang Wang,Bertrand Servin,B.L. Sayre,Bin Zhu,Deacon John Sweeney,Rich Moore,Wenhui Nie,Yongyi Shen,Yongyi Shen,Ruoping Zhao,Guojie Zhang,Jinquan Li,Thomas Faraut,James E. Womack,Ya-Ping Zhang,James Kijas,Noelle E. Cockett,Xun Xu,Xun Xu,Shuhong Zhao,Jun Wang,Wen Wang +42 more
TL;DR: This study shows that whole-genome mapping technology can be used for the de novo assembly of large genomes and compares transcriptomic analysis of the primary and secondary follicles of a cashmere goat to reveal 51 genes that are differentially expressed between the two types of hair follicles.
Journal ArticleDOI
The sheep genome illuminates biology of the rumen and lipid metabolism
Yu Jiang,Yu Jiang,Yu Jiang,Min Xie,Wenbin Chen,Richard Talbot,Jillian F. Maddox,Thomas Faraut,Chunhua Wu,Donna M. Muzny,Yuxiang Li,Wenguang Zhang,Wenguang Zhang,Jo-Ann L. Stanton,Rudiger Brauning,W. Barris,Thibaut Hourlier,Thibaut Hourlier,Bronwen Aken,Bronwen Aken,Stephen M. J. Searle,David L. Adelson,Chao Bian,Graham R. Cam,Yulin Chen,Shifeng Cheng,Udaya DeSilva,Karen Dixen,Yang Dong,Guangyi Fan,I.R. Franklin,Shaoyin Fu,Pablo Fuentes-Utrilla,Rui Guan,Margaret A. Highland,Margaret A. Highland,Michael Holder,Guodong Huang,Aaron Ingham,Shalini N. Jhangiani,Divya Kalra,Christie Kovar,Sandra L. Lee,Weiqing Liu,Xin Liu,Changxin Lu,Tian Lv,Tittu Mathew,Sean McWilliam,Moira Menzies,Shengkai Pan,David Robelin,Bertrand Servin,David Townley,Wenliang Wang,Bin Wei,Stephen N. White,Stephen N. White,Xinhua Yang,Chen Ye,Yaojing Yue,Peng Zeng,Qing Zhou,Jacob B. Hansen,Karsten Kristiansen,Richard A. Gibbs,Paul Flicek,Christopher C. Warkup,Huw E. Jones,V. Hutton Oddy,Frank W. Nicholas,John C. McEwan,James Kijas,Jun Wang,Kim C. Worley,Alan Archibald,Noelle E. Cockett,Xun Xu,Wen Wang,Brian P. Dalrymple +79 more
TL;DR: A genome for ewe and ewe Sheep-specific genetic changes underlie differences in lipid metabolism between sheep and other mammals, and may have contributed to the production of wool.
Journal ArticleDOI
Enzyme-specific profiles for genome annotation: PRIAM.
TL;DR: PRIAM, a method for automated enzyme detection in a fully sequenced genome, based on the classification of enzymes in the ENZYME database, is described, which relies on sets of position-specific scoring matrices automatically tailored for each ENZyME entry.