J
Jan Gorodkin
Researcher at University of Copenhagen
Publications - 160
Citations - 10588
Jan Gorodkin is an academic researcher from University of Copenhagen. The author has contributed to research in topics: RNA & Gene. The author has an hindex of 42, co-authored 141 publications receiving 8733 citations. Previous affiliations of Jan Gorodkin include Max Planck Society & Technical University of Denmark.
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Journal ArticleDOI
Human polymorphism at microRNAs and microRNA target sites.
Liuqing Yang,Chunru Lin,Chunyu Jin,Joy C. Yang,Bogdan Tanasa,Wenbo Wen-Hsiung Li,Daria Merkurjev,Kenneth a. Ohgi,Jie Zhang,Christopher P. Evans,Michael G. Rosenfeld,Charles E Vejnar,Matthias Blum,Evgeny M. Zdobnov,A Turchinovich,T R Samatov,a G Tonevitsky,B Burwinkel,Georg Schett,Dirk Elewaut,Iain B McInnes,Jean-Michel Dayer,Markus F Neurath,Sachin Pundhir,Jan Gorodkin,Fabiola Olivieri,Maria Rita Rippo,Antonio Domenico Procopio,Francesca Fazioli,Lukas T Jeker,Xuyu Zhou,Robert Blelloch,Jeffrey a Bluestone,Claudiane Guay,Romano Regazzi,Roopali Gandhi,Brian Healy,Taha Gholipour,Svetlana Egorova,Alexander Musallam,Mohammad Shuja Hussain,Parham Nejad,Bonny Patel,Hillary Hei,Samia Khoury,Francisco Quintana,Pia Kivisakk,Tanuja Chitnis,Howard L Weiner,Yun Deng,Jian Zhao,Daisuke Sakurai,Kenneth M. Kaufman,Jeffrey C. Edberg,Robert P. Kimberly,Diane L. Kamen,Gary S. Gilkeson,Chaim O. Jacob,R. Hal Scofield,Carl D. Langefeld,Jennifer A. Kelly,Rosalind Ramsey-Goldman,Michelle Petri,John D. Reveille,Luis M. Vilá,Graciela S. Alarcón,Timothy J. Vyse,Bernardo A. Pons-Estel,Barry I. Freedman,Patrick M. Gaffney,Kathy Moser Sivils,Judith A. James,Peter K. Gregersen,Juan-Manuel Anaya,Timothy B. Niewold,Joan T. Merrill,Lindsey A. Criswell,Anne M. Stevens,Susan A. Boackle,Rita M. Cantor,Weiling Chen,J Grossman,Bevra H. Hahn,John B. Harley,Marta E Alarcόn-Riquelme,Elizabeth E. Brown,Betty P. Tsao,Susan Carpenter,Maninjay Atianand,Daniel Aiello,Emiliano P Ricci,Pallavi Gandhi,Lisa L Hall,Meg Byron,Brian Monks,Meabh Henry-Bezy,Jeanne B Lawrence,Luke a J O'Neill,Melissa J Moore,Daniel R Caffrey,Katherine a Fitzgerald,Dan-Xia Zhu,Lei Fan,Rui-Nan Lu,Cheng Fang,Wen-Yi Shen,Zhi-Jian Zou,Yin-Hua Wang,Hua-Yuan Zhu,Kou-Rong Miao,Peng Liu,Wei Xu,Jian-Yong Li,Jing Gong,Yin Tong,Hong-Mei Zhang,Kai Wang,Tao Hu,Ge Shan,Jun Sun,An-Yuan Guo,V Davalos,C Moutinho,A Villanueva,R Boque,Pedro Silva,F Carneiro,M Esteller,R Stephanie Huang,Eric R. Gamazon,Dana Ziliak,Yujia Wen,Hae Kyung Im,Wei Zhang,Claudia Wing,Shiwei Duan,Wasim K Bleibel,Nancy J. Cox,M. Eileen Dolan,Patrick Brest,Pierre Lapaquette,Mouloud Souidi,Kevin Lebrigand,Annabelle Cesaro,Valérie Vouret-Craviari,Bernard Mari,Pascal Barbry,Jean-François Mosnier,Xavier Hébuterne,Annick Harel-Bellan,Baharia Mograbi,Arlette Darfeuille-Michaud,Paul Hofman,Jonathan Marchini,Bryan Howie,Lucia A. Hindorff,Praveen Sethupathy,Heather a Junkins,Erin M. Ramos,Jayashri P Mehta,Francis S. Collins,Teri A. Manolio,William O.C.M. Cookson,Liming Liang,Gonçalo R. Abecasis,Miriam F. Moffatt,Mark Lathrop,Matthew A. Saunders,Han Liang +168 more
Journal ArticleDOI
Analyses of pig genomes provide insight into porcine demography and evolution
Martien A. M. Groenen,Alan Archibald,Hirohide Uenishi,Christopher K. Tuggle,Yasuhiro Takeuchi,Max F. Rothschild,Claire Rogel-Gaillard,Chankyu Park,Denis Milan,Hendrik-Jan Megens,Shengting Li,Denis M. Larkin,Heebal Kim,Laurent A. F. Frantz,Mario Caccamo,Hyeonju Ahn,Bronwen Aken,Anna Anselmo,Christian Anthon,Loretta Auvil,Bouabid Badaoui,Craig W. Beattie,Christian Bendixen,Daniel Berman,Frank Blecha,Jonas Blomberg,Lars Bolund,Mirte Bosse,Sara Botti,Zhan Bujie,Megan Bystrom,Boris Capitanu,Denise Carvalho-Silva,Patrick Chardon,Celine Chen,Ryan Cheng,Sang-Haeng Choi,William Chow,Richard Clark,C M Clee,Richard P. M. A. Crooijmans,Harry D. Dawson,Patrice Dehais,Fioravante De Sapio,Bert Dibbits,Nizar Drou,Zhi-Qiang Du,Kellye Eversole,João Fadista,João Fadista,Susan Fairley,Thomas Faraut,Geoffrey J. Faulkner,Geoffrey J. Faulkner,Katie E. Fowler,Merete Fredholm,Eric Fritz,James G. R. Gilbert,Elisabetta Giuffra,Elisabetta Giuffra,Jan Gorodkin,Darren K. Griffin,Jennifer Harrow,Alexander Hayward,Kerstin Howe,Zhi-Liang Hu,Sean Humphray,Sean Humphray,Toby Hunt,Henrik Hornshøj,Jin-Tae Jeon,Patric Jern,Matthew Jones,Jerzy Jurka,Hiroyuki Kanamori,Ronan Kapetanovic,Jaebum Kim,Jaebum Kim,Jae-Hwan Kim,Kyu-Won Kim,Tae-Hun Kim,Greger Larson,Kyooyeol Lee,Kyung-Tai Lee,Richard M. Leggett,Harris A. Lewin,Yingrui Li,Wan Sheng Liu,Jane E. Loveland,Yao Lu,Joan K. Lunney,Jian Ma,Ole Madsen,Katherine M. Mann,Katherine M. Mann,Lucy Matthews,Stuart McLaren,Takeya Morozumi,Michael P. Murtaugh,Jitendra Narayan,Dinh Truong Nguyen,Peixiang Ni,Song-Jung Oh,Suneel Kumar Onteru,Frank Panitz,Eung-Woo Park,Hong-Seog Park,Géraldine Pascal,Yogesh Paudel,Miguel Pérez-Enciso,Ricardo H. Ramirez-Gonzalez,James M. Reecy,Sandra L. Rodriguez-Zas,Gary A. Rohrer,Lauretta A. Rund,Yongming Sang,Kyle M. Schachtschneider,Joshua G. Schraiber,John C. Schwartz,Linda Scobie,Carol Scott,Stephen M. J. Searle,Bertrand Servin,Bruce R. Southey,Göran O. Sperber,Peter F. Stadler,Jonathan V. Sweedler,Hakim Tafer,Bo Thomsen,Rashmi Wali,Jian Wang,Jun Wang,Simon D. M. White,Xun Xu,Martine Yerle,Guojie Zhang,Jianguo Zhang,Jie Zhang,Shuhong Zhao,Jane Rogers,Carol Churcher,Lawrence B. Schook +141 more
TL;DR: The assembly and analysis of the genome sequence of a female domestic Duroc pig and a comparison with the genomes of wild and domestic pigs from Europe and Asia reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago.
Journal ArticleDOI
Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
TL;DR: Many of the stringApp features are introduced and shown how they can be used to carry out complex network analysis and visualization tasks on a typical proteomics data set, all through the Cytoscape user interface.
Journal ArticleDOI
Comparing two K-category assignments by a K-category correlation coefficient
TL;DR: An extended correlation coefficient that applies to K-categories is proposed and this measure is shown to be highly applicable for evaluating prediction of RNA secondary structure in cases where some predicted pairs go into the category "unknown" due to lack of reliability in predicted pairs or unpaired residues.
Journal ArticleDOI
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.
Rasmus Wernersson,Mikkel H. Schierup,Frank G. Jørgensen,Jan Gorodkin,Frank Panitz,Hans Henrik Stærfeldt,Ole F. Christensen,Thomas Mailund,Henrik Hornshøj,Ami Klein,Jun Wang,Jun Wang,Bin Liu,Songnian Hu,Wei Dong,Wei Li,Gane Ka-Shu Wong,Jun Yu,Jian Wang,Christian Bendixen,Merete Fredholm,Søren Brunak,Huanming Yang,Lars Bolund,Lars Bolund +24 more
TL;DR: The addition of the pig to the set of species sequenced at low coverage adds to the understanding of selective pressures that have acted on the human genome by bisecting the evolutionary branch between human and mouse.