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Journal ArticleDOI

An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition

TLDR
The results suggest that the AMF primarily took up N in the inorganic form, and N export is one mechanism by which AMF could modify the soil microbial community and decomposition processes.
Abstract
Arbuscular mycorrhizal fungi (AMF) perform an important ecosystem service by improving plant nutrient capture from soil, yet little is known about how AMF influence soil microbial communities during nutrient uptake. We tested whether an AMF modifies the soil microbial community and nitrogen cycling during litter decomposition. A two-chamber microcosm system was employed to create a root-free soil environment to control AMF access to (13) C- and (15) N-labelled root litter. Using a 16S rRNA gene microarray, we documented that approximately 10% of the bacterial community responded to the AMF, Glomus hoi. Taxa from the Firmicutes responded positively to AMF, while taxa from the Actinobacteria and Comamonadaceae responded negatively to AMF. Phylogenetic analyses indicate that AMF may influence bacterial community assembly processes. Using nanometre-scale secondary ion mass spectrometry (NanoSIMS) we visualized the location of AMF-transported (13) C and (15) N in plant roots. Bulk isotope ratio mass spectrometry revealed that the AMF exported 4.9% of the litter (15) N to the host plant (Plantago lanceolata L.), and litter-derived (15) N was preferentially exported relative to litter-derived (13) C. Our results suggest that the AMF primarily took up N in the inorganic form, and N export is one mechanism by which AMF could modify the soil microbial community and decomposition processes.

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Journal ArticleDOI

Microbial interactions within the plant holobiont.

TL;DR: The fundamental role of microbe-microbe interactions (prokaryotes and micro-eukaryotes) for microbial community structure and plant health is discussed and a conceptual framework illustrating that interactions among microbiota members are critical for the establishment and the maintenance of host-microbial homeostasis is provided.
Journal ArticleDOI

Direct and indirect effects of climate change on soil microbial and soil microbial‐plant interactions: What lies ahead?

TL;DR: How climatic change affects soil microbes and soil microbe-plant interactions directly and indirectly is explored, and what ramifications changes in these interactions may have on the composition and function of ecosystems are discussed.
Journal ArticleDOI

Arbuscular mycorrhiza and nitrogen: implications for individual plants through to ecosystems

TL;DR: This review discusses the current evidence for AMF N uptake, transport and plant transfer under different experimental conditions and highlights key questions that remain to be resolved, both in relation to host plant and fungal N nutrition.
Journal ArticleDOI

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

TL;DR: Plants exert strong selection on the rhizosphere microbiota but soil composition is critical to its stability, as two abundant bacteria are shown to promote plant growth, but in Brassica the pathogen Olpidium brassicae came to dominate the fungal community.
References
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Journal ArticleDOI

FastTree 2--approximately maximum-likelihood trees for large alignments.

TL;DR: Improvements to FastTree are described that improve its accuracy without sacrificing scalability, and FastTree 2 allows the inference of maximum-likelihood phylogenies for huge alignments.
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Species assemblages and indicator species:the need for a flexible asymmetrical approach

TL;DR: A new and simple method to find indicator species and species assemblages characterizing groups of sites, and a new way to present species-site tables, accounting for the hierarchical relationships among species, is proposed.
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Chloroform fumigation and the release of soil nitrogen: A rapid direct extraction method to measure microbial biomass nitrogen in soil

TL;DR: In this paper, a direct extraction method for measuring soil microbial biomass nitrogen (biomass N) is described, which is based on CHC13 fumigation, followed by immediate extraction with 0.5 M K2SO4 and measurement of total N released by CHC 13 in the soil extracts.
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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

TL;DR: A ‘taxonomy to tree’ approach for transferring group names from an existing taxonomy to a tree topology is developed and used to apply the Greengenes, National Center for Biotechnology Information (NCBI) and cyanoDB (Cyanobacteria only) taxonomies to a de novo tree comprising 408 315 sequences.
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