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Open AccessJournal ArticleDOI

CAD systems for colorectal cancer from WSI are still not ready for clinical acceptance

TLDR
In this article, the authors analyzed some relevant works published on this particular task and highlighted the limitations that hinder the application of these works in clinical practice, and empirically investigated the feasibility of using weakly annotated datasets to support the development of computer-aided diagnosis systems for colorectal cancer from WSI.
Abstract
Most oncological cases can be detected by imaging techniques, but diagnosis is based on pathological assessment of tissue samples. In recent years, the pathology field has evolved to a digital era where tissue samples are digitised and evaluated on screen. As a result, digital pathology opened up many research opportunities, allowing the development of more advanced image processing techniques, as well as artificial intelligence (AI) methodologies. Nevertheless, despite colorectal cancer (CRC) being the second deadliest cancer type worldwide, with increasing incidence rates, the application of AI for CRC diagnosis, particularly on whole-slide images (WSI), is still a young field. In this review, we analyse some relevant works published on this particular task and highlight the limitations that hinder the application of these works in clinical practice. We also empirically investigate the feasibility of using weakly annotated datasets to support the development of computer-aided diagnosis systems for CRC from WSI. Our study underscores the need for large datasets in this field and the use of an appropriate learning methodology to gain the most benefit from partially annotated datasets. The CRC WSI dataset used in this study, containing 1,133 colorectal biopsy and polypectomy samples, is available upon reasonable request.

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Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations

TL;DR: In this paper , the authors proposed and evaluated an approach to eliminate the need for manual annotations to train computer-aided diagnosis tools in digital pathology, which includes two components, to automatically extract semantically meaningful concepts from diagnostic reports and use them as weak labels to train convolutional neural networks (CNNs) for histopathology diagnosis.
Journal ArticleDOI

Deep Learning on Histopathological Images for Colorectal Cancer Diagnosis: A Systematic Review

TL;DR: This work aims to systematically review the current research on AI in CRC image analysis to assist in diagnosis, predict clinically relevant molecular phenotypes and microsatellite instability, identify histological features related to prognosis and correlated to metastasis, and assess the specific components of the tumor microenvironment.
Journal ArticleDOI

Digital Pathology Implementation in Private Practice: Specific Challenges and Opportunities

TL;DR: In this article , the authors report their experience in digital pathology transition at a high-volume private laboratory, addressing the main challenges in DP implementation in a private practice setting and how to overcome these issues.
Journal ArticleDOI

Data-driven color augmentation for H&E stained images in computational pathology

TL;DR: In this paper , a Data-Driven Color Augmentation (DDCA) method was proposed to improve the efficiency of color augmentation methods by increasing the reliability of the samples used for training computational pathology models.
References
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Journal ArticleDOI

Deep learning

TL;DR: Deep learning is making major advances in solving problems that have resisted the best attempts of the artificial intelligence community for many years, and will have many more successes in the near future because it requires very little engineering by hand and can easily take advantage of increases in the amount of available computation and data.
Journal ArticleDOI

Weighted kappa: Nominal scale agreement provision for scaled disagreement or partial credit.

TL;DR: The Kw provides for the incorpation of ratio-scaled degrees of disagreement (or agreement) to each of the cells of the k * k table of joi.
Proceedings ArticleDOI

Grad-CAM: Visual Explanations from Deep Networks via Gradient-Based Localization

TL;DR: This work combines existing fine-grained visualizations to create a high-resolution class-discriminative visualization, Guided Grad-CAM, and applies it to image classification, image captioning, and visual question answering (VQA) models, including ResNet-based architectures.
Journal ArticleDOI

The cancer genome atlas pan-cancer analysis project

John N. Weinstein, +379 more
- 01 Oct 2013 - 
TL;DR: The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA with a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages.
Journal ArticleDOI

Colorectal cancer statistics, 2020.

TL;DR: Progress against CRC can be accelerated by increasing access to guideline‐recommended screening and high‐quality treatment, particularly among Alaska Natives, and elucidating causes for rising incidence in young and middle‐aged adults.
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