Journal ArticleDOI
CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
TLDR
In this paper, a program for evaluating the solution scattering from macromolecules with known atomic structure is presented, which uses multipole expansion for fast calculation of the spherically averaged scattering pattern and takes into account the hydration shell.Abstract:
A program for evaluating the solution scattering from macromolecules with known atomic structure is presented. The program uses multipole expansion for fast calculation of the spherically averaged scattering pattern and takes into account the hydration shell. Given the atomic coordinates (e.g. from the Brookhaven Protein Data Bank) it can either predict the solution scattering curve or fit the experimental scattering curve using only two free parameters, the average displaced solvent volume per atomic group and the contrast of the hydration layer. The program runs on IBM PCs and on the major UNIX platforms.read more
Citations
More filters
Journal ArticleDOI
Structural and biochemical characterization of the cell fate determining nucleotidyltransferase fold protein MAB21L1
TL;DR: The crystal structure of human full-length MAB21L1 is determined and a first structural framework for M AB21 proteins is provided, offering a structure-based explanation for the effects of MAB 21L2 mutations in patients with eye malformations.
Book ChapterDOI
Methods for using new conceptual tools and parameters to assess RNA structure by small-angle X-ray scattering.
TL;DR: Recent SAXS tools and technologies are described that substantially improve the potential for accurate and comprehensive analyses of flexibility, unstructured elements, conformational selection, and induced fit in RNA function.
Posted ContentDOI
Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2
TL;DR: A large majority of IDR sequences in the proteomes of human and other eukaryotes would be expected to function in the absence of conditional folding, and up to 80% of IDRs in archaea and bacteria are predicted to conditionally fold, but less than 20% of eUKaryotic IDRs.
Journal ArticleDOI
Improving Protein Template Recognition by Using Small-Angle X-Ray Scattering Profiles
TL;DR: A new algorithm, SAXSTER, is developed to couple the raw SAXS data with protein-fold-recognition algorithms and thus improve template-based protein-structure predictions, which is expected to work most efficiently for proteins of irregular global shape and/or multiple-domain protein complexes.
Journal ArticleDOI
Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures
TL;DR: Results of RNA topological structures derived from SAXS data or in combination with other experimental data are reviewed, as well as details on RNA sample preparation forSAXS experiments.
References
More filters
Book
International tables for X-ray crystallography
Norman Fordyce McKerron Henry,Lonsdale, Kathleen, Dame,John S. Kasper,Caroline H. MacGillavry,Gerard D. Rieck,James A. Ibers,Walter C. Hamilton +6 more
Angular Momentum in Quantum Mechanics
TL;DR: In this paper, the angular momentum, one of the most fundamental quantities in all of quantum mechanics, is introduced and a concise introduction to its application in atomic, molecular, and nuclear physics is provided.
Book
Angular Momentum in Quantum Mechanics
TL;DR: In this article, the angular momentum, one of the most fundamental quantities in all of quantum mechanics, is introduced and a concise introduction to its application in atomic, molecular, and nuclear physics is provided.