Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
TLDR
BI Search, a scalable, one-stop, cross-database search engine, has been significantly updated by providing easy access to a large number of internal and external biological resources from CNCB-NGDC, its partners, EBI and NCBI.Abstract:
The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a suite of database resources to support worldwide research activities in both academia and industry. With the explosive growth of multi-omics data, CNCB-NGDC is continually expanding, updating and enriching its core database resources through big data deposition, integration and translation. In the past year, considerable efforts have been devoted to 2019nCoVR, a newly established resource providing a global landscape of SARS-CoV-2 genomic sequences, variants, and haplotypes, as well as Aging Atlas, BrainBase, GTDB (Glycosyltransferases Database), LncExpDB, and TransCirc (Translation potential for circular RNAs). Meanwhile, a series of resources have been updated and improved, including BioProject, BioSample, GWH (Genome Warehouse), GVM (Genome Variation Map), GEN (Gene Expression Nebulas) as well as several biodiversity and plant resources. Particularly, BIG Search, a scalable, one-stop, cross-database search engine, has been significantly updated by providing easy access to a large number of internal and external biological resources from CNCB-NGDC, our partners, EBI and NCBI. All of these resources along with their services are publicly accessible at https://bigd.big.ac.cn.read more
Citations
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The Big Data Center: from deposition to integration and to translation
TL;DR: The BIG Data Center, established at Beijing Institute of Genomics (BIG), Chinese Academy of Sciences, provides a suite of database resources, providing freely open access to a variety of data resources in support of worldwide research activities in both academia and industry.
Journal ArticleDOI
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.
Tingting Chen,Xu Chen,Sisi Zhang,Junwei Zhu,Bixia Tang,Anke Wang,Lili Dong,Zhewen Zhang,Caixia Yu,Yanling Sun,Lianjiang Chi,Huanxin Chen,Shuang Zhai,Yubin Sun,Li Lan,Xin Zhang,Jingfa Xiao,Yiming Bao,Yanqing Wang,Zhang Zhang,Wenming Zhao +20 more
TL;DR: The Genome Sequence Archive (GSA) as discussed by the authors is a data repository for archiving raw sequence data, which provides data storage and sharing services for worldwide scientific communities, considering explosive data growth with diverse data types, here we present the GSA family by expanding into a set of resources for raw data archive with different purposes.
Journal ArticleDOI
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
TL;DR: The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a family of database resources to support global research in both academia and industry.
Journal ArticleDOI
Genome Warehouse: A Public Repository Housing Genome-scale Data.
Meili Chen,Yingke Ma,Song Wu,Song Wu,Xinchang Zheng,Hongen Kang,Hongen Kang,Jian Sang,Jian Sang,Xingjian Xu,Xingjian Xu,Lili Hao,Zhaohua Li,Zhaohua Li,Zheng Gong,Zheng Gong,Jingfa Xiao,Jingfa Xiao,Zhang Zhang,Zhang Zhang,Wenming Zhao,Wenming Zhao,Yiming Bao +22 more
TL;DR: The Genome Warehouse (GWH) as discussed by the authors is a public repository housing genome assembly data for a wide range of species and delivering a series of web services for genome data submission, storage, release, and sharing.
Journal ArticleDOI
The deep population history of northern East Asia from the Late Pleistocene to the Holocene.
Xiaowei Mao,H. Q. Zhang,H. Q. Zhang,Shiyu Qiao,Yichen Liu,Fengqin Chang,Ping Xie,Ming Zhang,Tianyi Wang,Tianyi Wang,Mian Li,Mian Li,Peng Cao,R. Yang,Feng Liu,Qingyan Dai,Xiaotian Feng,Wanjing Ping,Chuzhao Lei,John W. Olsen,John W. Olsen,E. Andrew Bennett,Qiaomei Fu +22 more
TL;DR: In this paper, the Amur region was found to have a Tianyuan-related ancestry prior to the Last Glacial Maximum (LGM) and the earliest northern East Asian appeared in the amur region, and this population is basal to ancient northern East Asians.
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