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Journal ArticleDOI

Discovery of Key Dioxygenases that Diverged the Paraherquonin and Acetoxydehydroaustin Pathways in Penicillium brasilianum

TLDR
The biosynthetic gene cluster of 1 (the prh cluster) is identified and the pathway up to berkeleydione (2) is elucidated, which serves as the key intermediate for the biosynthesis of 1 as well as many other meroterpenoids.
Abstract
Paraherquonin (1), a fungal meroterpenoid produced by Penicillium brasilianum NBRC 6234, possesses a unique, highly congested hexacyclic molecular architecture. Here we identified the biosynthetic gene cluster of 1 (the prh cluster) and elucidated the pathway up to berkeleydione (2), which serves as the key intermediate for the biosynthesis of 1 as well as many other meroterpenoids. Interestingly, the nonheme iron and α-ketoglutarate-dependent dioxygenase PrhA constructs the cycloheptadiene moiety to afford 2 from preaustinoid A1 (6), probably via the homoallyl-homoallyl radical rearrangement. Additionally, another fungal strain, P. brasilianum MG11, which produces acetoxydehydroaustin instead of 1, was found to have a gene cluster nearly identical to the prh cluster. The dioxygenase encoded by the cluster shares 92% sequence identity with PrhA, and also accepts 6 but produces preaustinoid A3 (17) with a spiro-lactone system, generating a diverging point for the two different meroterpenoid pathways in the...

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Citations
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Journal ArticleDOI

Amazing Diversity in Biochemical Roles of Fe(II)/2-Oxoglutarate Oxygenases.

TL;DR: This review provides a general overview of recently characterized oxygenase reactions and their key biological roles, highlighting roles in controlling chromatin modification, transcription, mRNA demethylation, and mRNA splicing.
Journal ArticleDOI

Recent examples of α-ketoglutarate-dependent mononuclear non-haem iron enzymes in natural product biosyntheses.

TL;DR: Several novel αKG-NHFe enzymes involved in natural product biosyntheses discovered in recent years are summarized, including halogenation reactions, amino acid modifications and tailoring reactions in the biosynthesis of terpenes, lipids, fatty acids and phosphonates.
References
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Journal ArticleDOI

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

TL;DR: Velvet represents a new approach to assembly that can leverage very short reads in combination with read pairs to produce useful assemblies and is in close agreement with simulated results without read-pair information.
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Easyfig: a genome comparison visualizer

TL;DR: Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface, enabling a rapid transition between analysis and the preparation of publication quality figures.
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Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.

TL;DR: Sensitive probabilistic modeling of extrinsic evidence such as sequence database matches can increase gene prediction accuracy and be used to extend the ab initio gene prediction program AUGUSTUS to a versatile tool that is able to predict genes under user-defined constraints.
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Versatility of biological non-heme Fe(II) centers in oxygen activation reactions

TL;DR: Data from several studies are presented showing that reductive O2 activation within this family is initiated by substrate (and in some cases cosubstrate or cofactor) binding, which then allows coordination of O2 to the metal.
Journal ArticleDOI

Meroterpenoids produced by fungi

TL;DR: This review deals with the isolation and structure elucidation of meroterpenoids from higher and lower fungi, and discusses biosynthetic studies and biological activities as appropriate.
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