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Gene expression profiling of mammary gland development reveals putative roles for death receptors and immune mediators in post-lactational regression

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TLDR
The sequential induction of distinct apoptosis pathways in involution and the stimulation of immunomodulatory signals are highlighted, which probably suppress the potentially damaging effects of a cellular inflammatory response while maintaining an appropriate antimicrobial and phagocytic environment.
Abstract
Introduction In order to gain a better understanding of the molecular processes that underlie apoptosis and tissue regression in mammary gland, we undertook a large-scale analysis of transcriptional changes during the mouse mammary pregnancy cycle, with emphasis on the transition from lactation to involution.

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Pregnancy-associated breast cancer and metastasis

TL;DR: The mammary microenvironment might become tumour-promoting after pregnancy because of the remodelling of the mammary gland to its pre-pregnant state, and this remodelling, which is associated with pro-inflammatory and wound-healing mechanisms, is proposed to support tumours dissemination.
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Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3

TL;DR: Oligonucleotide microarrays are a useful tool for identifying genes that are involved in the complex developmental process of mammary glands involution, with an early acute-phase response that occurs in the mammary gland itself and resembles a wound healing process.
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Postpartum mammary gland involution drives progression of ductal carcinoma in situ through collagen and COX-2

TL;DR: A mouse model of postpartum breast cancer that identifies mammary gland involution as a driving force of tumor progression is described and data support further research to determine whether women at high risk for postpartums breast cancer would benefit from treatment with nonsteroidal anti-inflammatory drugs (NSAIDs) during post partum involution.
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KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model

TL;DR: A path analysis model (KEGG-PATH) is developed to subdivide the total effect of each K EGG pathway into the direct effect and indirect effect by taking into account not only each KEGG pathway itself, but also the correlation with its related pathways.
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Stat3 controls lysosomal-mediated cell death in vivo

TL;DR: It is shown that the physiological process of post-lactational regression of the mammary gland is accomplished through a non-classical, lysosomal-mediated pathway of cell death, which requires Stat3, which upregulates the expression of lysOSomal proteases cathepsin B and L, while downregulating their endogenous inhibitor Spi2A.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
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CD14, a receptor for complexes of lipopolysaccharide (LPS) and LPS binding protein.

TL;DR: CD14, a differentiation antigen of monocytes, was found to bind complexes of LPS and LBP, and blockade of CD14 with monoclonal antibodies prevented synthesis of TNF-alpha by whole blood incubated with LPS.
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The Bcl2 family: regulators of the cellular life-or-death switch.

TL;DR: A better understanding of how the Bcl2 family controls caspase activation should result in new, more effective therapeutic approaches in tissue homeostasis and cancer.
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Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection

TL;DR: A statistical model is proposed for the probe-level data, and model-based estimates for gene expression indexes are developed, which help to identify and handle cross-hybridizing probes and contaminating array regions.
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Human CD14 mediates recognition and phagocytosis of apoptotic cells

TL;DR: Results indicate that clearance of apoptotic cells is mediated by a receptor whose interactions with ‘non-self’ components (LPS) and ‘self” components (apoptotic cells) produce distinct macrophage responses.
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