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Open AccessJournal ArticleDOI

Genomic Correlate of Exceptional Erlotinib Response in Head and Neck Squamous Cell Carcinoma.

TLDR
Selective erlotinib use in HNSCC may be informed by precision oncology approaches and Hypotheses were formulated regarding enhanced erlot inib response in preclinical models harboring the patient tumor somatic variant MAPK1 E322K following the identification of tumor somatics variants.
Abstract
Importance Randomized clinical trials demonstrate no benefit for epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors in unselected patients with head and neck squamous cell carcinoma (HNSCC). However, a patient with stage IVA HNSCC received 13 days of neoadjuvant erlotinib and experienced a near-complete histologic response. Objective To determine a mechanism of exceptional response to erlotinib therapy in HNSCC. Design, Setting, and Participants Single patient with locally advanced HNSCC who received erlotinib monotherapy in a window-of-opportunity clinical trial (patients scheduled to undergo primary cancer surgery are treated briefly with an investigational agent). Whole-exome sequencing of pretreatment tumor and germline patient samples was performed at a quaternary care academic medical center, and a candidate somatic variant was experimentally investigated for mediating erlotinib response. Intervention A brief course of erlotinib monotherapy followed by surgical resection. Main Outcomes and Measures Identification of pretreatment tumor somatic alterations that may contribute to the exceptional response to erlotinib. Hypotheses were formulated regarding enhanced erlotinib response in preclinical models harboring the patient tumor somatic variant MAPK1 E322K following the identification of tumor somatic variants. Results No EGFR alterations were observed in the pretreatment tumor DNA. Paradoxically, the tumor harbored an activating MAPK1 E322K mutation (allelic fraction 0.13), which predicts ERK activation and erlotinib resistance in EGFR -mutant lung cancer. The HNSCC cells with MAPK1 E322K exhibited enhanced EGFR phosphorylation and erlotinib sensitivity compared with wild-type MAPK1 cells. Conclusions and Relevance Selective erlotinib use in HNSCC may be informed by precision oncology approaches.

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Journal ArticleDOI

The mutational landscape of cutaneous T cell lymphoma and Sezary syndrome

TL;DR: These analyses identify a distinctive pattern of somatic copy number alterations in Sézary syndrome, including highly prevalent chromosomal deletions involving the TP53, RB1, PTEN, DNMT3A and CDKN1B tumor suppressors and support the development of personalized therapies targeting key oncogenically activated signaling pathways for the treatment of these diseases.
Journal ArticleDOI

EGFR-targeted therapies in the post-genomic era

TL;DR: Genome sequencing of head and neck tumors has helped identify patient subgroups with improved response to EGFR inhibitors, for example, cetuximab in patients with the KRAS-variant and the tyrosine kinase inhibitor erlotinib for tumors harboring MAPK1E322K mutations.
Journal ArticleDOI

Precision Oncology: The Road Ahead

TL;DR: The benefits of integrating genomic and transcriptomic analyses for advanced precision oncology are outlined, and relevant computational approaches to detect novel drivers and genetic vulnerabilities, suitable for therapeutic exploration are summarized.
Journal ArticleDOI

Precision oncology in the age of integrative genomics

TL;DR: This work states that integrative clinical sequencing programs applied at the point of care have the potential to improve the clinical management of cancer patients.
References
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Journal ArticleDOI

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

TL;DR: The results indicate that large, annotated cell-line collections may help to enable preclinical stratification schemata for anticancer agents and the generation of genetic predictions of drug response in the preclinical setting and their incorporation into cancer clinical trial design could speed the emergence of ‘personalized’ therapeutic regimens.
Journal ArticleDOI

Comprehensive genomic characterization of head and neck squamous cell carcinomas

Michael S. Lawrence, +309 more
- 29 Jan 2015 - 
TL;DR: It is shown that human-papillomavirus-associated tumours are dominated by helical domain mutations of the oncogene PIK3CA, novel alterations involving loss of TRAF3, and amplification of the cell cycle gene E2F1.
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