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Linking soil bacterial biodiversity and soil carbon stability

TLDR
Using dual-stable isotope probing, it is shown that changes in the diversity and composition of two functional bacterial groups occur with this ‘priming’ effect, with consequences for native soil C stability.
Abstract
Native soil carbon (C) can be lost in response to fresh C inputs, a phenomenon observed for decades yet still not understood. Using dual-stable isotope probing, we show that changes in the diversity and composition of two functional bacterial groups occur with this ‘priming’ effect. A single-substrate pulse suppressed native soil C loss and reduced bacterial diversity, whereas repeated substrate pulses stimulated native soil C loss and increased diversity. Increased diversity after repeated C amendments contrasts with resource competition theory, and may be explained by increased predation as evidenced by a decrease in bacterial 16S rRNA gene copies. Our results suggest that biodiversity and composition of the soil microbial community change in concert with its functioning, with consequences for native soil C stability.

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Direct and indirect effects of climate change on soil microbial and soil microbial‐plant interactions: What lies ahead?

TL;DR: How climatic change affects soil microbes and soil microbe-plant interactions directly and indirectly is explored, and what ramifications changes in these interactions may have on the composition and function of ecosystems are discussed.
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Microplastics from mulching film is a distinct habitat for bacteria in farmland soil

TL;DR: Co-occurrence network analysis revealed that the biotic interactions between microorganisms on microplastics are as complex as those in soil, and Acidobacteria, Chloroflexi, Gemmatimonadetes, and Bacteroids are considered keystone species in bacterial communities.
Journal ArticleDOI

Quantitative Microbial Ecology through Stable Isotope Probing

TL;DR: qSIP is demonstrated using soil incubations, in which soil bacteria exhibited strong taxonomic variations in 18O and 13C composition after exposure to [18O]water or [13C]glucose, demonstrating the benefit of a quantitative approach to stable isotope probing.
References
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Journal ArticleDOI

UCHIME improves sensitivity and speed of chimera detection

TL;DR: UCHIME has better sensitivity than ChimeraSlayer (previously the most sensitive database method), especially with short, noisy sequences, and in testing on artificial bacterial communities with known composition, UCHIME de novo sensitivity is shown to be comparable to Perseus.
Journal ArticleDOI

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

TL;DR: An improved alignment strategy uses the Infernal secondary structure aware aligner to provide a more consistent higher quality alignment and faster processing of user sequences, and a new Pyrosequencing Pipeline that provides tools to support analysis of ultra high-throughput rRNA sequencing data.
Journal ArticleDOI

The diversity and biogeography of soil bacterial communities

TL;DR: Bacterial diversity was highest in neutral soils and lower in acidic soils, with soils from the Peruvian Amazon the most acidic and least diverse in this study.
Journal ArticleDOI

Review of mechanisms and quantification of priming effects.

TL;DR: In this paper, the authors reveal possible causes and processes leading to priming actions using the references on agricultural ecosystems and model experiments, and summarize in Tables for positive and negative real and apparent priming effects induced after the addition of different organic and mineral substances to the soil.
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