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“Sight‐unseen” detection of rare aquatic species using environmental DNA

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TLDR
Quantitative comparisons with traditional fisheries surveillance tools illustrate the greater sensitivity of eDNA and reveal that the risk of invasion to the Laurentian Great Lakes is imminent.
Abstract
Effective management of rare species, including endangered native species and recently introduced nonindigenous species, requires the detection of populations at low density. For endangered species, detecting the localized distribution makes it possible to identify and protect critical habitat to enhance survival or reproductive success. Similarly, early detection of an incipient invasion by a harmful species increases the feasibility of rapid responses to eradicate the species or contain its spread. Here we demonstrate the efficacy of environmental DNA (eDNA) as a detection tool in freshwater environments. Specifically, we delimit the invasion fronts of two species of Asian carps in Chicago, Illinois, USA area canals and waterways. Quantitative comparisons with traditional fisheries surveillance tools illustrate the greater sensitivity of eDNA and reveal that the risk of invasion to the Laurentian Great Lakes is imminent.

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Posted ContentDOI

Evaluating intraspecific genetic diversity of a fish population using environmental DNA: An approach to distinguish true haplotypes from erroneous sequences

TL;DR: The approach proposed in this study successfully eliminated most of false positive haplotypes in the HTS data obtained from eDNA samples, which allowed us to improve the detection accuracy for evaluating intraspecific diversity using eDNA analysis.
Journal ArticleDOI

Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution.

TL;DR: A systematic literature review of 407 peer-reviewed papers on aquatic eDNA published between 2012 and 2021 is presented in this paper , showing a gradual increase in the annual number of publications from four (2012) to 28 (2018) followed by a rapid growth to 124 publications in 2021, which was mirrored by a tremendous diversification of methods in all aspects of the eDNA workflow.
Journal ArticleDOI

Detection of the endangered European weather loach ( Misgurnus fossilis) via water and sediment samples: Testing multiple eDNA workflows

TL;DR: The results showed that the long‐term water preservation method commonly used for eDNA surveys of M. fossilis did not lead to optimal DNA yields, and a cost‐efficient high salt DNA extraction led to the highest target DNA yields and can be used for sediment and water samples.
Journal ArticleDOI

Needles in a haystack: Genomic tools have become powerful tools for conservation biologists to monitor the spread of invasive species

Howard Wolinsky
- 01 Apr 2011 - 
TL;DR: The use of environmental DNA (eDNA) to detect R. catesbeiana without observing the animals themselves allows the reliable detection of secretive organisms in wetlands without direct observation, and opens new perspectives for the assessment of current biodiversity from environmental samples.
Journal ArticleDOI

Combining surface and soil environmental DNA with artificial cover objects to improve terrestrial reptile survey detection

TL;DR: In this paper , the authors tested the degree to which inclusion of surface and soil eDNA sampling into conventional artificial cover methods elevates the detection probability of a small, cryptic terrestrial lizard, Scincella lateralis.
References
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Journal ArticleDOI

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

TL;DR: The motivation, design principles and priorities that have shaped the development of MEGA are discussed and how MEGA might evolve in the future to assist researchers in their growing need to analyze large data set using new computational methods are discussed.
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The role of propagule pressure in explaining species invasions.

TL;DR: Propagule pressure is proposed as a key element to understanding why some introduced populations fail to establish whereas others succeed and how the study of propagule pressure can provide an opportunity to tie together disparate research agendas within invasion ecology.
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Species detection using environmental DNA from water samples.

TL;DR: A novel approach, based on the limited persistence of DNA in the environment, to detect the presence of a species in fresh water, using specific primers that amplify short mitochondrial DNA sequences to track the existence of a frog in controlled environments and natural wetlands.
Journal ArticleDOI

Biological invasions: recommendations for U.S. policy and management.

TL;DR: The Ecological Society of America recommends that the federal government take the following six actions: use new information and practices to better manage commercial and other pathways to reduce the transport and release of potentially harmful species, and establish a National Center for Invasive Species Management.
Journal ArticleDOI

An ounce of prevention or a pound of cure: bioeconomic risk analysis of invasive species

TL;DR: A quantitative bioeconomic modelling framework is presented to analyse risks from non–indigenous species to economic activity and the environment, and it is shown that society could benefit by spending up to US$324 000 year−1 to prevent invasions into a single lake with a power plant.
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