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Universal RNA Reference Materials for Gene Expression

TLDR
Work is underway at NIST and among members of the gene expression array community to further define two RNA reference materials that would help in standardization of gene-expression technologies and make them available.
Abstract
A workshop entitled "Metrology and Standards Needs for Gene Expression Technologies: Universal RNA Standards" was held in March 2003 to define the requirements for standardizing RNA-based molecular assays, specifically microarray and quantitative reverse-transcriptase-PCR technologies. NIST sponsored the workshop, and participants represented government, industry, academia, and clinic. Workshop participants concluded that as a first step, two RNA reference materials could be defined that would help in standardization of gene-expression technologies: an Assay Process Reference Material, and a Universal Array Hybridization Reference Material. The specific characteristics of these two standardized materials were broadly outlined. The Assay Process Material was proposed to be a pool of 96 expressed human sequences of defined composition, cloned in a defined vector and pooled in prescribed ways. The Universal Array Hybridization Material was defined as a pool of 12 "alien" synthetic sequences not expressed in any known genome to be used to control for variability in array hybridization methods. Work is underway at NIST and among members of the gene expression array community to further define these materials and make them available.

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Real-time RT-PCR normalisation; strategies and considerations

TL;DR: This review discusses the relative merits of different normalisation strategies, suggests a method of validation that will enable the measurement of biologically meaningful results and discusses the popular practice of measuring an internal reference or housekeeping gene.
Journal ArticleDOI

Standardizing global gene expression analysis between laboratories and across platforms

TL;DR: In this paper, the authors proposed a method for standardizing global gene expression analysis between laboratories and across platforms, which can be found in Section 5.2.1.1].
Journal ArticleDOI

XPS and NEXAFS studies of aliphatic and aromatic amine species on functionalized surfaces

TL;DR: In this article, a detailed XPS (X-ray photoelectron spectroscopy) and NEXAFS (Near edge X-ray absorption fine structure) database for amino functionalized surfaces is presented.
References
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Journal ArticleDOI

Gene expression profiling predicts clinical outcome of breast cancer

TL;DR: DNA microarray analysis on primary breast tumours of 117 young patients is used and supervised classification is applied to identify a gene expression signature strongly predictive of a short interval to distant metastases (‘poor prognosis’ signature) in patients without tumour cells in local lymph nodes at diagnosis, providing a strategy to select patients who would benefit from adjuvant therapy.
BookDOI

Traceability in chemical measurement

TL;DR: De Bievre et al. as mentioned in this paper proposed a traceability protocol to the SI by gravimetric analysis, based on the pulser method, which is used for traceability of reference values carried by reference materials.
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