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Adam M. Session
Researcher at University of California, Berkeley
Publications - 8
Citations - 1272
Adam M. Session is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Genome & Genome evolution. The author has an hindex of 7, co-authored 7 publications receiving 886 citations. Previous affiliations of Adam M. Session include Lawrence Berkeley National Laboratory & Joint Genome Institute.
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Journal ArticleDOI
Genome evolution in the allotetraploid frog Xenopus laevis
Adam M. Session,Adam M. Session,Yoshinobu Uno,Taejoon Kwon,Taejoon Kwon,Jarrod Chapman,Atsushi Toyoda,Shuji Takahashi,Akimasa Fukui,Akira Hikosaka,Atsushi Suzuki,Mariko Kondo,Simon J. van Heeringen,Ian K. Quigley,Sven Heinz,Hajime Ogino,Haruki Ochi,Uffe Hellsten,Jessica B. Lyons,Oleg Simakov,Nicholas H. Putnam,Jonathan C. Stites,Yoko Kuroki,Toshiaki Tanaka,Tatsuo Michiue,Minoru Watanabe,Ozren Bogdanovic,Ryan Lister,Georgios Georgiou,Sarita S. Paranjpe,Ila van Kruijsbergen,Shengquiang Shu,Joseph W. Carlson,Tsutomu Kinoshita,Yuko Ohta,Shuuji Mawaribuchi,Jerry Jenkins,Jane Grimwood,Jeremy Schmutz,Therese Mitros,Sahar V. Mozaffari,Yutaka Suzuki,Yoshikazu Haramoto,Takamasa S. Yamamoto,Chiyo Takagi,Rebecca Heald,Kelly E. Miller,Christian D. Haudenschild,Jacob O. Kitzman,Takuya Nakayama,Yumi Izutsu,Jacques Robert,Joshua D. Fortriede,Kevin A. Burns,Vaneet Lotay,Kamran Karimi,Yuuri Yasuoka,Darwin S. Dichmann,Martin F. Flajnik,Douglas W. Houston,Jay Shendure,Louis DuPasquier,Peter D. Vize,Aaron M. Zorn,Michihiko Ito,Edward M. Marcotte,John B. Wallingford,Yuzuru Ito,Makoto Asashima,Naoto Ueno,Naoto Ueno,Yoichi Matsuda,Gert Jan C. Veenstra,Asao Fujiyama,Asao Fujiyama,Asao Fujiyama,Richard M. Harland,Masanori Taira,Daniel S. Rokhsar,Daniel S. Rokhsar,Daniel S. Rokhsar +80 more
TL;DR: The Xenopus laevis genome is sequenced and it is estimated that the two diploid progenitor species diverged around 34 million years ago and combined to form an allotetraploid around 17–18 Ma, where more than 56% of all genes were retained in two homoeologous copies.
Journal ArticleDOI
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
Jarrod Chapman,Martin Mascher,Aydin Buluc,Kerrie Barry,Evangelos Georganas,Evangelos Georganas,Adam M. Session,Veronika Strnadova,Jerry Jenkins,Sunish K. Sehgal,Sunish K. Sehgal,Leonid Oliker,Jeremy Schmutz,Katherine Yelick,Katherine Yelick,Uwe Scholz,Robbie Waugh,Jesse Poland,Gary J. Muehlbauer,Nils Stein,Daniel S. Rokhsar,Daniel S. Rokhsar +21 more
TL;DR: In this paper, a sequence assembly representing 9.1 Gbp of the highly repetitive 16 Gbp genome of hexaploid wheat, Triticum aestivum, and 7.1 gb of this assembly to chromosomal locations is presented.
Journal ArticleDOI
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
John T. Lovell,Alice MacQueen,Sujan Mamidi,Jason Bonnette,Jerry Jenkins,Joseph D. Napier,Avinash Sreedasyam,Adam Healey,Adam M. Session,Adam M. Session,Shengqiang Shu,Kerrie Barry,Stacy A. Bonos,Lori Beth Boston,Christopher Daum,Shweta Deshpande,Aren Ewing,Paul P. Grabowski,Taslima Haque,Melanie Harrison,Jiming Jiang,Dave Kudrna,Anna Lipzen,Thomas H. Pendergast,Christopher Plott,Peng Qi,Christopher A. Saski,Eugene V. Shakirov,Eugene V. Shakirov,David W. Sims,Manoj Sharma,Rita Sharma,Ada Stewart,Vasanth R. Singan,Yuhong Tang,Sandra Thibivillier,Jenell Webber,Xiaoyu Weng,Melissa Williams,Guohong Albert Wu,Yuko Yoshinaga,Matthew Zane,Li Zhang,Ji-Yi Zhang,Kathrine D. Behrman,A. Boe,Philip A. Fay,Felix B. Fritschi,Julie D. Jastrow,John Lloyd-Reilley,Juan Manuel Martínez-Reyna,Roser Matamala,Robert B. Mitchell,Francis M. Rouquette,Pamela C. Ronald,Pamela C. Ronald,Malay C. Saha,Christian M. Tobias,Michael K. Udvardi,Rod A. Wing,Yanqi Wu,Laura E. Bartley,Laura E. Bartley,Michael D. Casler,Michael D. Casler,Katrien M. Devos,David B. Lowry,David B. Lowry,Daniel S. Rokhsar,Jane Grimwood,Thomas E. Juenger,Jeremy Schmutz +71 more
TL;DR: In this paper, the authors present the assembly and annotation of the large and complex genome of the polyploid bioenergy crop switchgrass (Panicum virgatum) and investigate patterns of climate adaptation.
Journal ArticleDOI
Genome biology of the paleotetraploid perennial biomass crop Miscanthus.
Therese Mitros,Therese Mitros,Adam M. Session,Adam M. Session,Brandon T. James,Guohong Albert Wu,Mohammad B Belaffif,Lindsay V. Clark,Shengqiang Shu,Hongxu Dong,Adam Barling,Jessica R Holmes,Jessica Mattick,Jessica Mattick,Jessen V. Bredeson,Siyao Liu,Siyao Liu,Kerrie Farrar,Katarzyna Głowacka,Katarzyna Głowacka,Stanisław Jeżowski,Kerrie Barry,Won Byoung Chae,Won Byoung Chae,John A. Juvik,Justin M. Gifford,Adebosola Oladeinde,Toshihiko Yamada,Jane Grimwood,Nicholas H. Putnam,Jose J De Vega,Susanne Barth,Manfred Klaas,Trevor R. Hodkinson,Laigeng Li,Xiaoli Jin,Junhua Peng,Chang Yeon Yu,Kweon Heo,Ji Hye Yoo,Bimal Kumar Ghimire,Iain Donnison,Jeremy Schmutz,Matthew E. Hudson,Erik J. Sacks,Stephen P. Moose,Kankshita Swaminathan,Daniel S. Rokhsar +47 more
TL;DR: The chromosome-scale assembly of the paleotetraploid M. sinensis genome is reported, providing a resource for Miscanthus that links its chromosomes to the related diploid Sorghum and complex polyploid sugarcanes and identifies several balanced reciprocal homoeologous exchanges.
Journal ArticleDOI
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
Sean P. Gordon,Bruno Contreras-Moreira,Joshua J. Levy,Joshua J. Levy,Armin Djamei,Armin Djamei,Angelika Czedik-Eysenberg,Virginia S. Tartaglio,Virginia S. Tartaglio,Adam M. Session,Joel Martin,Amy Cartwright,Andrew Katz,Vasanth R. Singan,Eugene Goltsman,Kerrie Barry,Vinh Ha Dinh-Thi,Boulos Chalhoub,Boulos Chalhoub,Antonio Díaz-Pérez,Antonio Díaz-Pérez,Rubén Sancho,Joanna Lusinska,Elzbieta Wolny,Candida Nibau,John H. Doonan,Luis A. J. Mur,Christopher Plott,Jerry Jenkins,Samuel P. Hazen,Scott J. Lee,Shengqiang Shu,David Goodstein,Daniel S. Rokhsar,Daniel S. Rokhsar,Jeremy Schmutz,Robert Hasterok,Pilar Catalán,Pilar Catalán,Pilar Catalán,John P. Vogel,John P. Vogel +41 more
TL;DR: Pan-genomic approach is used to reveal gradual polyploid genome evolution by analyzing of Brachypodium hybridum and its diploid progenitors and results are consistent with a gradual accumulation of genomic changes afterpolyploidization and a lack of subgenome expression dominance.