A
Alexander Poliakov
Researcher at Joint Genome Institute
Publications - 9
Citations - 7805
Alexander Poliakov is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 7, co-authored 9 publications receiving 6817 citations. Previous affiliations of Alexander Poliakov include United States Department of Energy.
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Journal ArticleDOI
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson,John E. Bowers,Rémy Bruggmann,Inna Dubchak,Jane Grimwood,Heidrun Gundlach,Georg Haberer,Uffe Hellsten,Therese Mitros,Alexander Poliakov,Jeremy Schmutz,Manuel Spannagl,Haibao Tang,Xiyin Wang,Xiyin Wang,Thomas Wicker,Arvind K. Bharti,Jarrod Chapman,F. Alex Feltus,F. Alex Feltus,Udo Gowik,Igor V. Grigoriev,Eric Lyons,Christopher G. Maher,Mihaela Martis,Apurva Narechania,Robert Otillar,Bryan W. Penning,Asaf Salamov,Yu Wang,Lifang Zhang,Nicholas C. Carpita,Michael Freeling,Alan R. Gingle,C. Thomas Hash,Beat Keller,Patricia E. Klein,Stephen Kresovich,Maureen C. McCann,Ray Ming,Daniel G. Peterson,Daniel G. Peterson,Mehboob-ur-Rahman,Mehboob-ur-Rahman,Doreen Ware,Doreen Ware,Peter Westhoff,Klaus F. X. Mayer,Joachim Messing,Daniel S. Rokhsar,Daniel S. Rokhsar +50 more
TL;DR: An initial analysis of the ∼730-megabase Sorghum bicolor (L.) Moench genome is presented, placing ∼98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information.
Journal ArticleDOI
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
Sabeeha S. Merchant,Simon E. Prochnik,Olivier Vallon,Elizabeth H. Harris,Steven J. Karpowicz,George B. Witman,Astrid Terry,Asaf Salamov,Lillian K. Fritz-Laylin,Laurence Maréchal-Drouard,Wallace F. Marshall,Liang-Hu Qu,David R. Nelson,Anton A. Sanderfoot,Martin H. Spalding,Vladimir V. Kapitonov,Qinghu Ren,Patrick J. Ferris,Erika Lindquist,Harris Shapiro,Susan Lucas,Jane Grimwood,Jeremy Schmutz,Pierre Cardol,Pierre Cardol,Heriberto Cerutti,Guillaume Chanfreau,Chun-Long Chen,Valérie Cognat,Martin T. Croft,Rachel M. Dent,Susan K. Dutcher,Emilio Fernández,Hideya Fukuzawa,David González-Ballester,Diego González-Halphen,Armin Hallmann,Marc Hanikenne,Michael Hippler,William Inwood,Kamel Jabbari,Ming Kalanon,Richard Kuras,Paul A. Lefebvre,Stéphane D. Lemaire,Alexey V. Lobanov,Martin Lohr,Andrea L Manuell,Iris Meier,Laurens Mets,Maria Mittag,Telsa M. Mittelmeier,James V. Moroney,Jeffrey L. Moseley,Carolyn A. Napoli,Aurora M. Nedelcu,Krishna K. Niyogi,Sergey V. Novoselov,Ian T. Paulsen,Greg Pazour,Saul Purton,Jean-Philippe Ral,Diego Mauricio Riaño-Pachón,Wayne R. Riekhof,Linda A. Rymarquis,Michael Schroda,David B. Stern,James G. Umen,Robert D. Willows,Nedra F. Wilson,Sara L. Zimmer,Jens Allmer,Janneke Balk,Katerina Bisova,Chong-Jian Chen,Marek Eliáš,Karla C Gendler,Charles R. Hauser,Mary Rose Lamb,Heidi K. Ledford,Joanne C. Long,Jun Minagawa,M. Dudley Page,Junmin Pan,Wirulda Pootakham,Sanja Roje,Annkatrin Rose,Eric Stahlberg,Aimee M. Terauchi,Pinfen Yang,Steven G. Ball,Chris Bowler,Carol L. Dieckmann,Vadim N. Gladyshev,Pamela J. Green,Richard A. Jorgensen,Stephen P. Mayfield,Bernd Mueller-Roeber,Sathish Rajamani,Richard T. Sayre,Peter Brokstein,Inna Dubchak,David Goodstein,Leila Hornick,Y. Wayne Huang,Jinal Jhaveri,Yigong Luo,Diego Martinez,Wing Chi Abby Ngau,Bobby Otillar,Alexander Poliakov,Aaron Porter,Lukasz Szajkowski,Gregory Werner,Kemin Zhou,Igor V. Grigoriev,Daniel S. Rokhsar,Daniel S. Rokhsar,Arthur R. Grossman +118 more
TL;DR: Analyses of the Chlamydomonas genome advance the understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella.
Journal ArticleDOI
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Wensheng Wang,Ramil Mauleon,Zhiqiang Hu,Dmytro Chebotarov,Shuaishuai Tai,Zhichao Wu,Min Li,Tianqing Zheng,Roven Rommel Fuentes,Fan Zhang,Locedie Mansueto,Dario Copetti,Dario Copetti,Millicent D. Sanciangco,Kevin Palis,Jianlong Xu,Chen Sun,Binying Fu,Hongliang Zhang,Yongming Gao,Xiuqin Zhao,Fei Shen,Xiao Cui,Hong Yu,Zichao Li,Miaolin Chen,Jeffrey Detras,Yongli Zhou,Xinyuan Zhang,Yue Zhao,Dave Kudrna,Chunchao Wang,Rui Li,Jia Ben,Jinyuan Lu,Xianchang He,Zhaotong Dong,Jiabao Xu,Yanhong Li,Miao Wang,Jianxin Shi,Jing Li,Dabing Zhang,Seunghee Lee,Wushu Hu,Alexander Poliakov,Inna Dubchak,Inna Dubchak,Victor Jun Ulat,Frances Nikki Borja,John Robert Mendoza,Jauhar Ali,Qiang Gao,Yongchao Niu,Zhen Yue,Ma. Elizabeth B. Naredo,Jayson Talag,Xueqiang Wang,Jinjie Li,Xiaodong Fang,Ye Yin,Jean-Christophe Glaszmann,Jianwei Zhang,Jiayang Li,Ruaraidh Sackville Hamilton,Rod A. Wing,Rod A. Wing,Jue Ruan,Gengyun Zhang,Chaochun Wei,Nickolai Alexandrov,Kenneth L. McNally,Zhikang Li,Hei Leung +73 more
TL;DR: Analyses of genetic variation and population structure based on over 3,000 cultivated rice (Oryza sativa) genomes reveal subpopulations that correlate with geographic location and patterns of introgression consistent with multiple rice domestication events.
Journal ArticleDOI
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
Henrik P. Nordberg,Michael D Cantor,Serge Dusheyko,Susan Z Hua,Alexander Poliakov,Igor Shabalov,Tatyana Smirnova,Igor V. Grigoriev,Inna Dubchak +8 more
TL;DR: Major updates of the Genome Portal in the past 2 years are described with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI.
Journal ArticleDOI
The genome of the western clawed frog xenopus tropicalis
Uffe Hellsten,Richard M. Harland,Michael J. Gilchrist,David A. Hendrix,Jerzy Jurka,Vladimir V. Kapitonov,Ivan Ovcharenko,Nicholas H. Putnam,Shengqiang Shu,Leila Taher,Ira L. Blitz,Bruce Blumberg,Darwin S. Dichmann,Inna Dubchak,Enrique Amaya,John C. Detter,Russell B. Fletcher,Daniela S. Gerhard,David Goodstein,Tina Graves,Igor V. Grigoriev,Jane Grimwood,Takeshi Kawashima,Takeshi Kawashima,Erika Lindquist,Susan Lucas,Paul E. Mead,Therese Mitros,Hajime Ogino,Yuko Ohta,Alexander Poliakov,Nicolas Pollet,Jacques Robert,Asaf Salamov,Amy K. Sater,Jeremy Schmutz,Astrid Terry,Peter D. Vize,Wesley C. Warren,Dan E. Wells,Andrea E. Wills,Richard K. Wilson,Lyle B. Zimmerman,Aaron M. Zorn,Robert M. Grainger,Timothy C. Grammer,Mustafa K. Khokha,Paul G. Richardson,Daniel S. Rokhsar,Daniel S. Rokhsar +49 more
TL;DR: The western clawed frog Xenopus tropicalis is an important model for vertebrate development that combines experimental advantages of the African clawed frogs Xenopus laevis with more tractable genetics.