A
Amber L. Simpson
Researcher at Queen's University
Publications - 121
Citations - 3564
Amber L. Simpson is an academic researcher from Queen's University. The author has contributed to research in topics: Computer science & Image-guided surgery. The author has an hindex of 25, co-authored 110 publications receiving 2119 citations. Previous affiliations of Amber L. Simpson include Vanderbilt University & Memorial Sloan Kettering Cancer Center.
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A large annotated medical image dataset for the development and evaluation of segmentation algorithms
Amber L. Simpson,Michela Antonelli,Spyridon Bakas,Michel Bilello,Keyvan Farahani,Bram van Ginneken,Annette Kopp-Schneider,Bennett A. Landman,Geert Litjens,Bjoern H. Menze,Olaf Ronneberger,Ronald M. Summers,Patrick Bilic,Patrick Ferdinand Christ,Richard K. G. Do,Marc J. Gollub,Jennifer Golia-Pernicka,Stephan Heckers,William R. Jarnagin,Maureen McHugo,Sandy Napel,Eugene Vorontsov,Lena Maier-Hein,M. Jorge Cardoso +23 more
TL;DR: A large, curated dataset representative of several highly variable segmentation tasks that was used in a crowd-sourced challenge - the Medical Segmentation Decathlon held during the 2018 Medical Image Computing and Computer Aided Interventions Conference in Granada, Spain.
Journal ArticleDOI
Extracellular Vesicle and Particle Biomarkers Define Multiple Human Cancers
Ayuko Hoshino,Ayuko Hoshino,Han Sang Kim,Han Sang Kim,Linda Bojmar,Linda Bojmar,Linda Bojmar,Kofi Ennu Gyan,Michele Cioffi,Jonathan M. Hernandez,Jonathan M. Hernandez,Jonathan M. Hernandez,Constantinos P. Zambirinis,Constantinos P. Zambirinis,Gonçalo Rodrigues,Gonçalo Rodrigues,Henrik Molina,Søren Heissel,Milica Tesic Mark,Loïc Steiner,Loïc Steiner,Alberto Benito-Martin,Serena Lucotti,Angela Di Giannatale,Katharine Offer,Miho Nakajima,Caitlin Williams,Laura Nogués,Laura Nogués,Fanny A. Pelissier Vatter,Ayako Hashimoto,Ayako Hashimoto,Ayako Hashimoto,Alexander E. Davies,Daniela Freitas,Daniela Freitas,Candia M. Kenific,Yonathan Ararso,Weston Buehring,Pernille Lauritzen,Yusuke Ogitani,Kei Sugiura,Kei Sugiura,Naoko Takahashi,Maša Alečković,Kayleen A. Bailey,Joshua S. Jolissant,Joshua S. Jolissant,Huajuan Wang,Ashton Harris,L. Miles Schaeffer,Guillermo García-Santos,Guillermo García-Santos,Zoe Posner,Vinod P. Balachandran,Yasmin Khakoo,G. Praveen Raju,Avigdor Scherz,Irit Sagi,Ruth Scherz-Shouval,Yosef Yarden,Moshe Oren,Mahathi Malladi,Mary Petriccione,Kevin C. De Braganca,Maria Donzelli,Cheryl Fischer,Stephanie Vitolano,Geraldine P. Wright,Lee Ganshaw,Mariel Marrano,Amina Ahmed,Joe DeStefano,Enrico Danzer,Michael H.A. Roehrl,Norman J. Lacayo,Theresa C. Vincent,Theresa C. Vincent,Martin R. Weiser,Mary S. Brady,Paul A. Meyers,Leonard H. Wexler,Srikanth R. Ambati,Alexander J. Chou,Emily K. Slotkin,Shakeel Modak,Stephen S. Roberts,Ellen M. Basu,Daniel Diolaiti,Benjamin A. Krantz,Benjamin A. Krantz,Fatima Cardoso,Amber L. Simpson,Michael F. Berger,Charles M. Rudin,Diane M. Simeone,Maneesh Jain,Cyrus M. Ghajar,Surinder K. Batra,Ben Z. Stanger,Jack D. Bui,Kristy A. Brown,Vinagolu K. Rajasekhar,John H. Healey,Maria de Sousa,Maria de Sousa,Kim Kramer,Sujit Sheth,Jeanine Baisch,Virginia Pascual,Todd E. Heaton,Michael P. La Quaglia,David J. Pisapia,Robert E. Schwartz,Haiying Zhang,Yuan Liu,Arti Shukla,Laurence Blavier,Yves A. DeClerck,Mark A. LaBarge,Mina J. Bissell,Thomas C. Caffrey,Paul M. Grandgenett,Michael A. Hollingsworth,Jacqueline Bromberg,Jacqueline Bromberg,Bruno Costa-Silva,Héctor Peinado,Yibin Kang,Benjamin A. Garcia,Eileen M. O'Reilly,David P. Kelsen,Tanya M. Trippett,David R. Jones,Irina Matei,William R. Jarnagin,David Lyden +136 more
TL;DR: EVP proteins can serve as reliable biomarkers for cancer detection and determining cancer type, and a panel of tumor-type-specific EVP proteins in TEs and plasma are defined, which can classify tumors of unknown primary origin.
Posted Content
The Medical Segmentation Decathlon
Michela Antonelli,Annika Reinke,Spyridon Bakas,Keyvan Farahani,AnnetteKopp-Schneider,Bennett A. Landman,Geert Litjens,Bjoern H. Menze,Olaf Ronneberger,Ronald M. Summers,Bram van Ginneken,Michel Bilello,Patrick Bilic,Patrick Ferdinand Christ,Richard K. G. Do,Marc J. Gollub,Stephan Heckers,Henkjan J. Huisman,William R. Jarnagin,Maureen McHugo,Sandy Napel,Jennifer S. Goli Pernicka,Kawal Rhode,Catalina Tobon-Gomez,Eugene Vorontsov,James A. Meakin,Sebastien Ourselin,Manuel Wiesenfarth,Pablo Arbeláez,Byeonguk Bae,Sihong Chen,Laura Alexandra Daza,Jianjiang Feng,Baochun He,Fabian Isensee,Yuanfeng Ji,Fucang Jia,Namkug Kim,Ildoo Kim,Dorit Merhof,Akshay Pai,Beomhee Park,Mathias Perslev,Ramin Rezaiifar,Oliver Rippel,Ignacio Sarasua,Wei Shen,Jaemin Son,Christian Wachinger,Liansheng Wang,Yan Wang,Yingda Xia,Daguang Xu,Zhanwei Xu,Yefeng Zheng,Amber L. Simpson,Lena Maier-Hein,M. Jorge Cardoso +57 more
TL;DR: The Medical Segmentation Decathlon (MSD) as mentioned in this paper was organized to evaluate the performance of image segmentation algorithms given a specific clinical problem and a set of unseen clinical problems, such as unbalanced labels, multi-site data and small objects.
Journal ArticleDOI
Survival Prediction in Pancreatic Ductal Adenocarcinoma by Quantitative Computed Tomography Image Analysis.
Marc A. Attiyeh,Jayasree Chakraborty,Alexandre Doussot,Liana Langdon-Embry,Shiana Mainarich,Mithat Gonen,Vinod P. Balachandran,Michael I. D’Angelica,Ronald P. DeMatteo,William R. Jarnagin,T. Peter Kingham,Peter J. Allen,Amber L. Simpson,Richard K. G. Do +13 more
TL;DR: Quantitative analysis of CT texture features is associated with overall survival, and two continuous survival prediction models for resected PDAC patients are presented.
Journal ArticleDOI
Near Real-Time Computer Assisted Surgery for Brain Shift Correction Using Biomechanical Models
TL;DR: A novel preoperative and intraoperative computational processing pipeline for near real-time brain shift correction in the operating room was developed to automate and simplify the processing steps and five surgical cases were analyzed with respect to the computational pipeline and workflow timing.