C
Clifford A. Kapono
Researcher at University of California, San Diego
Publications - 10
Citations - 2669
Clifford A. Kapono is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Mass spectrometry & Coral. The author has an hindex of 9, co-authored 9 publications receiving 1735 citations. Previous affiliations of Clifford A. Kapono include University of Montana.
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Journal ArticleDOI
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Mingxun Wang,Jeremy Carver,Vanessa V. Phelan,Laura M. Sanchez,Neha Garg,Yao Peng,Don D. Nguyen,Jeramie D. Watrous,Clifford A. Kapono,Tal Luzzatto-Knaan,Carla Porto,Amina Bouslimani,Alexey V. Melnik,Michael J. Meehan,Wei-Ting Liu,Max Crüsemann,Paul D. Boudreau,Eduardo Esquenazi,Mario Sandoval-Calderón,Roland D. Kersten,Laura A. Pace,Robert A. Quinn,Katherine R. Duncan,Cheng-Chih Hsu,Dimitrios J. Floros,Ronnie G. Gavilan,Karin Kleigrewe,Trent R. Northen,Rachel J. Dutton,Delphine Parrot,Erin E. Carlson,Bertrand Aigle,Charlotte Frydenlund Michelsen,Lars Jelsbak,Christian Sohlenkamp,Pavel A. Pevzner,Anna Edlund,Anna Edlund,Jeffrey S. McLean,Jeffrey S. McLean,Jörn Piel,Brian T. Murphy,Lena Gerwick,Chih-Chuang Liaw,Yu-Liang Yang,Hans-Ulrich Humpf,Maria Maansson,Robert A. Keyzers,Amy C. Sims,Andrew R. Johnson,Ashley M. Sidebottom,Brian E. Sedio,Andreas Klitgaard,Charles B. Larson,Charles B. Larson,Cristopher A. Boya P.,Daniel Torres-Mendoza,David Gonzalez,Denise Brentan Silva,Denise Brentan Silva,Lucas Miranda Marques,Daniel P. Demarque,Egle Pociute,Ellis C. O’Neill,Enora Briand,Enora Briand,Eric J. N. Helfrich,Eve A. Granatosky,Evgenia Glukhov,Florian Ryffel,Hailey Houson,Hosein Mohimani,Jenan J. Kharbush,Yi Zeng,Julia A. Vorholt,Kenji L. Kurita,Pep Charusanti,Kerry L. McPhail,Kristian Fog Nielsen,Lisa Vuong,Maryam Elfeki,Matthew F. Traxler,Niclas Engene,Nobuhiro Koyama,Oliver B. Vining,Ralph S. Baric,Ricardo Pianta Rodrigues da Silva,Samantha J. Mascuch,Sophie Tomasi,Stefan Jenkins,Venkat R. Macherla,Thomas Hoffman,Vinayak Agarwal,Philip G. Williams,Jingqui Dai,Ram P. Neupane,Joshua R. Gurr,Andrés M. C. Rodríguez,Anne Lamsa,Chen Zhang,Kathleen Dorrestein,Brendan M. Duggan,Jehad Almaliti,Pierre-Marie Allard,Prasad Phapale,Louis-Félix Nothias,Theodore Alexandrov,Marc Litaudon,Jean-Luc Wolfender,Jennifer E. Kyle,Thomas O. Metz,Tyler Peryea,Dac-Trung Nguyen,Danielle VanLeer,Paul Shinn,Ajit Jadhav,Rolf Müller,Katrina M. Waters,Wenyuan Shi,Xueting Liu,Lixin Zhang,Rob Knight,Paul R. Jensen,Bernhard O. Palsson,Kit Pogliano,Roger G. Linington,Marcelino Gutiérrez,Norberto Peporine Lopes,William H. Gerwick,William H. Gerwick,Bradley S. Moore,Bradley S. Moore,Pieter C. Dorrestein,Pieter C. Dorrestein,Nuno Bandeira,Nuno Bandeira +135 more
TL;DR: In GNPS, crowdsourced curation of freely available community-wide reference MS libraries will underpin improved annotations and data-driven social-networking should facilitate identification of spectra and foster collaborations.
Journal ArticleDOI
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures
Neha Garg,Clifford A. Kapono,Yan Wei Lim,Nobuhiro Koyama,Mark J. A. Vermeij,Douglas Conrad,Forest Rohwer,Pieter C. Dorrestein +7 more
TL;DR: It is highlighted that molecular networking can be used as an organizational tool of tandem mass spectrometry data, automated database search for rapid identification of metabolites, and as a workflow to manage and compare mass spectromaetry data from complex mixtures of organisms.
Sharing and community curation of mass spectrometry data with GNPS
Mingxun Wang,Jeremy Carver,Vanessa V. Phelan,Laura M. Sanchez,Neha Garg,Yao Peng,Don D. Nguyen,Jeramie D. Watrous,Clifford A. Kapono,Tal Luzzatto-Knaan,Carla Porto,Amina Bouslimani,Alexey V. Melnik,Michael J. Meehan,Wei-Ting Liu,Max Crüsemann,Paul D. Boudreau,Eduardo Esquenazi,Mario Sandoval-Calderón,Roland D. Kersten,Laura A. Pace,Robert A. Quinn,Katherine R. Duncan,Cheng-Chih Hsu,Dimitrios J. Floros,Ronnie G. Gavilan,Karin Kleigrewe,Trent R. Northen,Rachel J. Dutton,Delphine Parrot,Erin E. Carlson,Bertrand Aigle,Charlotte Frydenlund Michelsen,Lars Jelsbak,Christian Sohlenkamp,Pavel A. Pevzner,Anna Edlund,Jeffrey S. McLean,Jörn Piel,Brian T. Murphy,Lena Gerwick,Chih-Chuang Liaw,Yu-Liang Yang,Hans-Ulrich Humpf,Maria Maansson,Robert A. Keyzers,Amy C. Sims,Andrew R. Johnson,Ashley M. Sidebottom,Brian E. Sedio,Andreas Klitgaard,Charles B. Larson,Cristopher A. Boya P.,Daniel Torres-Mendoza,David Gonzalez,Denise Brentan Silva,Lucas Miranda Marques,Daniel P. Demarque,Egle Pociute,Ellis C. O’Neill,Enora Briand,Eric J. N. Helfrich,Eve A. Granatosky,Evgenia Glukhov,Florian Ryffel,Hailey Houson,Hosein Mohimani,Jenan J. Kharbush,Yi Zeng,Julia A. Vorholt,Kenji L. Kurita,Pep Charusanti,Kerry L. McPhail,Kristian Fog Nielsen,Lisa Vuong,Maryam Elfeki,Matthew F. Traxler,Niclas Engene,Nobuhiro Koyama,Oliver B. Vining,Ralph S. Baric,Ricardo Pianta Rodrigues da Silva,Samantha J. Mascuch,Sophie Tomasi,Stefan Jenkins,Venkat R. Macherla,Thomas Hoffman,Vinayak Agarwal,Philip G. Williams,Jingqui Dai,Ram P. Neupane,Joshua R. Gurr,Andrés M. C. Rodríguez,Anne Lamsa,Chen Zhang,Kathleen Dorrestein,Brendan M. Duggan,Jehad Almaliti,Pierre-Marie Allard,Prasad Phapale,Louis-Félix Nothias,Theodore Alexandrov,Marc Litaudon,Jean-Luc Wolfender,Jennifer E. Kyle,Thomas O. Metz,Tyler Peryea,Dac-Trung Nguyen,Danielle VanLeer,Paul Shinn,Ajit Jadhav,Rolf Müller,Katrina M. Waters,Wenyuan Shi,Xueting Liu,Lixin Zhang,Rob Knight,Paul R. Jensen,Bernhard O. Palsson,Kit Pogliano,Roger G. Linington,Marcelino Gutiérrez,Norberto Peporine Lopes,William H. Gerwick,Bradley S. Moore,Pieter C. Dorrestein,Nuno Bandeira +126 more
TL;DR: The Global Natural Products Social Molecular Networking (GNPS) as discussed by the authors is an open-access knowledge base for community wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data.
Journal ArticleDOI
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats
Daniel Petras,Louis-Félix Nothias,Robert A. Quinn,Theodore Alexandrov,Theodore Alexandrov,Nuno Bandeira,Amina Bouslimani,Gabriel Castro-Falcón,Liangyu Chen,Tam Dang,Tam Dang,Dimitrios J. Floros,Vivian Hook,Neha Garg,Nicole C. Hoffner,Yike Jiang,Clifford A. Kapono,Irina Koester,Rob Knight,Christopher A. Leber,Tie-Jun Ling,Tie-Jun Ling,Tal Luzzatto-Knaan,Laura-Isobel McCall,Aaron P. McGrath,Michael J. Meehan,Jonathan K. Merritt,Robert H. Mills,Jamie Morton,Sonia Podvin,Ivan Protsyuk,Trevor N Purdy,Kendall Satterfield,Stephen C. Searles,Sahil H. Shah,Sarah E Shires,Dana J. Steffen,Margot E. White,Jelena Todoric,Robert N. Tuttle,Aneta Wojnicz,Valerie Sapp,Fernando Vargas,Jin Yang,Chao Zhang,Pieter C. Dorrestein +45 more
TL;DR: The chemical diversity of five built human habitats together with their occupants is visualize to provide a snapshot of the various molecules to which humans are exposed on a daily basis and indicates that significant transfer of chemicals takes place between us and the authors' built environment.
Journal ArticleDOI
Creating a 3D microbial and chemical snapshot of a human habitat.
Clifford A. Kapono,James T. Morton,Amina Bouslimani,Alexey V. Melnik,Kayla Orlinsky,Tal Luzzatto Knaan,Neha Garg,Yoshiki Vázquez-Baeza,Ivan Protsyuk,Stefan Janssen,Qiyun Zhu,Theodore Alexandrov,Larry Smarr,Rob Knight,Pieter C. Dorrestein,Pieter C. Dorrestein +15 more
TL;DR: 3D molecular cartography was used in combination with mass spectrometry and microbial inventories to highlight human-environmental interactions and offer novel insights to investigators who value the reconstructing of human lifestyle and characterization of human environmental interaction.