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Edda Rayko
Researcher at École Normale Supérieure
Publications - 11
Citations - 1944
Edda Rayko is an academic researcher from École Normale Supérieure. The author has contributed to research in topics: Phaeodactylum tricornutum & Genome. The author has an hindex of 8, co-authored 11 publications receiving 1721 citations. Previous affiliations of Edda Rayko include Centre national de la recherche scientifique.
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Chris Bowler,Andrew E. Allen,Andrew E. Allen,Jonathan H. Badger,Jane Grimwood,Kamel Jabbari,Alan Kuo,Uma Maheswari,Cindy Martens,Florian Maumus,Robert Otillar,Edda Rayko,Asaf Salamov,Klaas Vandepoele,Bank Beszteri,Ansgar Gruber,Marc Heijde,Michael Katinka,Thomas Mock,Klaus Valentin,Frédéric Verret,John A. Berges,Colin Brownlee,Jean-Paul Cadoret,Anthony Chiovitti,Chang Jae Choi,Sacha Coesel,Alessandra De Martino,J. Chris Detter,Colleen A. Durkin,Angela Falciatore,Jérome Fournet,Miyoshi Haruta,Marie J. J. Huysman,Bethany D. Jenkins,Katerina Jiroutova,Richard E. Jorgensen,Yolaine Joubert,Aaron Kaplan,Nils Kröger,Peter G. Kroth,Erica Lindquist,Markus Lommer,Véronique Martin-Jézéquel,Pascal J. Lopez,Susan Lucas,Manuela Mangogna,Karen M. McGinnis,Linda K. Medlin,Anton Montsant,Anton Montsant,Marie-Pierre Oudot-Le Secq,Carolyn A. Napoli,Miroslav Oborník,Micaela S. Parker,Jean-Louis Petit,Betina M. Porcel,Nicole Poulsen,Matthew Robison,Leszek Rychlewski,Tatiana A. Rynearson,Jeremy Schmutz,Jeremy Schmutz,Harris Shapiro,Magali Siaut,Michele S. Stanley,Michael R. Sussman,Alison Taylor,Assaf Vardi,Peter von Dassow,Wim Vyverman,Anusuya Willis,Lucyan S. Wyrwicz,Daniel S. Rokhsar,Jean Weissenbach,E. Virginia Armbrust,Beverley R. Green,Yves Van de Peer,Igor V. Grigoriev +78 more
TL;DR: Analysis of molecular divergence compared with yeasts and metazoans reveals rapid rates of gene diversification in diatoms, and documents the presence of hundreds of genes from bacteria, likely to provide novel possibilities for metabolite management and for perception of environmental signals.
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Transcription factor families inferred from genome sequences of photosynthetic stramenopiles
TL;DR: In this article, lineage-specific diversity in transcription factors (TFs) from stramenopile (or heterokont) genome sequences was identified by comparing a pennate (Phaeodactylum tricornutum) and a centric diatom (Thalassiosira pseudonana).
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Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling
Marie J. J. Huysman,Marie J. J. Huysman,Cindy Martens,Cindy Martens,Klaas Vandepoele,Klaas Vandepoele,Jeroen Gillard,Edda Rayko,Marc Heijde,Chris Bowler,Dirk Inzé,Dirk Inzé,Yves Van de Peer,Yves Van de Peer,Lieven De Veylder,Lieven De Veylder,Wim Vyverman +16 more
TL;DR: The recent genome sequencing of Thalassiosira pseudonana and Phaeodactylum tricornutum allows us to explore the molecular conservation of cell cycle regulation in diatoms as discussed by the authors.
Journal ArticleDOI
Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana
Anton Montsant,Andrew E. Allen,Sacha Coesel,Alessandra De Martino,Angela Falciatore,Manuela Mangogna,Magali Siaut,Marc Heijde,Kamel Jabbari,Uma Maheswari,Edda Rayko,Assaf Vardi,Kirk E. Apt,John A. Berges,Anthony Chiovitti,Aubrey K. Davis,Kimberlee Thamatrakoln,Masood Z. Hadi,Todd W. Lane,J. Casey Lippmeier,Diego Martinez,Micaela S. Parker,Gregory J. Pazour,Mak A. Saito,Daniel S. Rokhsar,E. Virginia Armbrust,Chris Bowler +26 more
TL;DR: The basic cellular systems controlling cell signaling, gene expression, cytoskeletal structures, and response to stress have been cataloged in an attempt to obtain a global view of the molecular foundations that sustain such an ecologically successful group of organisms.
Journal ArticleDOI
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Alaguraj Veluchamy,Xin Lin,Xin Lin,Florian Maumus,Florian Maumus,Maximo Rivarola,Maximo Rivarola,Jaysheel Bhavsar,Todd Creasy,Kimberly O'Brien,Naomi Sengamalay,Luke J. Tallon,Andrew D. Smith,Edda Rayko,Ikhlak Ahmed,Stéphane Le Crom,Gregory K. Farrant,Jean-Yves Sgro,Sue A. Olson,Sandra Splinter BonDurant,Andrew E. Allen,Pablo D. Rabinowicz,Michael R. Sussman,Chris Bowler,Leila Tirichine +24 more
TL;DR: The first whole-genome methylome from a stramenopile, the marine model diatom Phaeodactylum tricornutum, is reported, finding extensive methylation in transposable elements and that genes with partial methylation tend to be constitutively expressed.