F
Francine E. Garrett-Bakelman
Researcher at University of Virginia
Publications - 52
Citations - 4928
Francine E. Garrett-Bakelman is an academic researcher from University of Virginia. The author has contributed to research in topics: Myeloid leukemia & Myeloid. The author has an hindex of 19, co-authored 44 publications receiving 3468 citations. Previous affiliations of Francine E. Garrett-Bakelman include Cornell University.
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Journal ArticleDOI
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin,Matthias Kormaksson,Sheng Li,Francine E. Garrett-Bakelman,Maria E. Figueroa,Ari Melnick,Christopher E. Mason +6 more
TL;DR: An R package that rapidly analyzes genome-wide cytosine epigenetic profiles from high-throughput methylation and Hydroxymethylation sequencing experiments is described, which includes functions for clustering, sample quality visualization, differential methylation analysis and annotation features, thus automating and simplifying many of the steps for discerning statistically significant bases or regions of DNAmethylation.
Journal ArticleDOI
The N 6 -methyladenosine (m 6 A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells
Ly P. Vu,Brian F. Pickering,Yuanming Cheng,Sara Zaccara,Diu T.T. Nguyen,Gerard Minuesa,Timothy Chou,Arthur Chow,Yogesh Saletore,Matthew MacKay,Jessica Schulman,Christopher Famulare,Minal Patel,Virginia M. Klimek,Francine E. Garrett-Bakelman,Ari Melnick,Martin Carroll,Christopher E. Mason,Samie R. Jaffrey,Michael G. Kharas +19 more
TL;DR: It is shown that shRNA-mediated depletion of the m6A-forming enzyme METTL3 in human hematopoietic stem/progenitor cells (HSPCs) promotes cell differentiation, coupled with reduced cell proliferation, and this results provide a rationale for the therapeutic targeting of MET TL3 in myeloid leukemia.
Journal ArticleDOI
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.
Francine E. Garrett-Bakelman,Francine E. Garrett-Bakelman,Manjula Darshi,Stefan J. Green,Ruben C. Gur,Ling Lin,Brandon R. Macias,Miles J. McKenna,Cem Meydan,Tejaswini Mishra,Jad Nasrini,Brian D. Piening,Brian D. Piening,Lindsay F. Rizzardi,Kumar Sharma,Jamila H. Siamwala,Jamila H. Siamwala,Lynn Taylor,Martha Hotz Vitaterna,Maryam Afkarian,Ebrahim Afshinnekoo,Sara Ahadi,Aditya Ambati,Maneesh Arya,Daniela Bezdan,Colin M. Callahan,Songjie Chen,Augustine M.K. Choi,George E. Chlipala,Kévin Contrepois,Marisa Covington,Brian Crucian,Immaculata De Vivo,David F. Dinges,Douglas J. Ebert,Jason I. Feinberg,Jorge Gandara,Kerry George,John Goutsias,George Grills,Alan R. Hargens,Martina Heer,Martina Heer,Ryan P. Hillary,Andrew N. Hoofnagle,Vivian Hook,Garrett Jenkinson,Garrett Jenkinson,Peng Jiang,Ali Keshavarzian,Steven S. Laurie,Brittany Lee-McMullen,Sarah B. Lumpkins,Matthew MacKay,Mark Maienschein-Cline,Ari Melnick,Tyler M. Moore,Kiichi Nakahira,Hemal H. Patel,Robert Pietrzyk,Varsha Rao,Rintaro Saito,Rintaro Saito,Denis Salins,Jan M. Schilling,Dorothy D. Sears,Caroline Sheridan,Michael B. Stenger,Rakel Tryggvadottir,Alexander E. Urban,Tomas Vaisar,Benjamin Van Espen,Jing Zhang,Michael G. Ziegler,Sara R. Zwart,John B. Charles,Craig E. Kundrot,Graham B. I. Scott,Susan M. Bailey,Mathias Basner,Andrew P. Feinberg,Stuart M. C. Lee,Christopher E. Mason,Emmanuel Mignot,Brinda K. Rana,Scott M. Smith,Michael Snyder,Fred W. Turek,Fred W. Turek +88 more
TL;DR: Given that the majority of the biological and human health variables remained stable, or returned to baseline, after a 340-day space mission, these data suggest that human health can be mostly sustained over this duration of spaceflight.
Journal ArticleDOI
Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia
Sheng Li,Francine E. Garrett-Bakelman,Stephen S. Chung,Mathijs A. Sanders,Todd Hricik,Franck Rapaport,Jay P. Patel,Richard Dillon,Priyanka Vijay,Anna L. Brown,Alexander E. Perl,Joy Cannon,Lars Bullinger,Selina M. Luger,Michael Becker,Ian D. Lewis,Ian D. Lewis,Ian D. Lewis,Luen Bik To,Ruud Delwel,Bob Löwenberg,Hartmut Döhner,Konstanze Döhner,Monica L. Guzman,Duane C. Hassane,Gail J. Roboz,David Grimwade,Peter J. M. Valk,Richard J D'Andrea,Richard J D'Andrea,Martin Carroll,Christopher Y. Park,Donna Neuberg,Ross L. Levine,Ari Melnick,Christopher E. Mason +35 more
TL;DR: It is observed that epigenetic allele burden is linked to inferior outcome and varies considerably during disease progression, and genetic and epigenetic heterogeneity can occur with distinct kinetics likely to affect the biological and clinical features of tumors.
Journal ArticleDOI
Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia
Altuna Akalin,Francine E. Garrett-Bakelman,Matthias Kormaksson,Jennifer Busuttil,Lu Zhang,Irina Khrebtukova,Thomas A. Milne,Yongsheng Huang,Debabrata Biswas,Jay L. Hess,C. David Allis,Robert G. Roeder,Peter J. M. Valk,Bob Löwenberg,Ruud Delwel,Hugo F. Fernandez,Elisabeth Paietta,Martin S. Tallman,Gary P. Schroth,Christopher E. Mason,Ari Melnick,Maria E. Figueroa +21 more
TL;DR: An enhanced form of reduced representation bisulfite sequencing with extended genomic coverage was developed, which resulted in greater capture of DNA methylation information of regions lying outside of traditional CpG islands, which demonstrated that genetically distinct AML subtypes display diametrically opposedDNA methylation patterns.