J
Joy Bergelson
Researcher at University of Chicago
Publications - 170
Citations - 23178
Joy Bergelson is an academic researcher from University of Chicago. The author has contributed to research in topics: Population & Gene. The author has an hindex of 72, co-authored 163 publications receiving 20956 citations. Previous affiliations of Joy Bergelson include University of York & Brown University.
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Journal ArticleDOI
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
Susanna Atwell,Yu S. Huang,Bjarni J. Vilhjálmsson,Glenda Willems,Matthew W. Horton,Yan Li,Dazhe Meng,Alexander Platt,Aaron M. Tarone,Tina T. Hu,Rong Jiang,N. Wayan Muliyati,Xu Zhang,Muhammad Ali Amer,Ivan Baxter,Benjamin Brachi,Joanne Chory,Joanne Chory,Caroline Dean,Marilyne Debieu,Juliette de Meaux,Joseph R. Ecker,Nathalie Faure,Joel M. Kniskern,Jonathan D. G. Jones,Todd P. Michael,Adnane Nemri,Fabrice Roux,Fabrice Roux,David E. Salt,Chunlao Tang,Marco Todesco,M. Brian Traw,Detlef Weigel,Paul Marjoram,Justin O. Borevitz,Joy Bergelson,Magnus Nordborg +37 more
TL;DR: This study demonstrates the feasibility of GWA studies in A. thaliana and suggests that the approach will be appropriate for many other organisms, particularly when inbred lines are available.
Journal ArticleDOI
The pattern of polymorphism in Arabidopsis thaliana.
Magnus Nordborg,Tina T. Hu,Yoko Ishino,Jinal Jhaveri,Christopher Toomajian,Honggang Zheng,E. G. Bakker,Peter Calabrese,Jean Gladstone,Rana Goyal,Mattias Jakobsson,Sung K. Kim,Yuri Morozov,Badri Padhukasahasram,Vincent Plagnol,Noah A. Rosenberg,Chitiksha Shah,Jeffrey D. Wall,Jue Wang,Keyan Zhao,Theodore S. Kalbfleisch,Vincent P. Schulz,Martin Kreitman,Joy Bergelson +23 more
TL;DR: The data support the utility of A. thaliana as a model for evolutionary functional genomics and suggest there is a genome-wide excess of rare alleles and too much variation between genomic regions in the level of polymorphism.
Journal ArticleDOI
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
Carlos Alonso-Blanco,Jorge Andrade,Claude Becker,Felix Bemm,Joy Bergelson,Karsten M. Borgwardt,Jun Cao,Eunyoung Chae,Todd M. Dezwaan,Wei Ding,Joseph R. Ecker,Moises Exposito-Alonso,Ashley Farlow,Joffrey Fitz,Xiangchao Gan,Dominik G. Grimm,Angela M. Hancock,Stefan R. Henz,Svante Holm,Matthew W. Horton,Mike Jarsulic,Randall A. Kerstetter,Arthur Korte,Pamela Korte,Christa Lanz,Cheng-Ruei Lee,Dazhe Meng,Todd P. Michael,Richard Mott,Ni Wayan Muliyati,Thomas Nägele,Matthias Nagler,Viktoria Nizhynska,Magnus Nordborg,Polina Yu. Novikova,F. Xavier Picó,Alexander Platzer,Fernando A. Rabanal,Alex Rodriguez,Beth A. Rowan,Patrice A. Salomé,Karl Schmid,Robert J. Schmitz,Ümit Seren,Felice Gianluca Sperone,Mitchell Sudkamp,Hannes Svardal,Matt M. Tanzer,Donald Todd,Samuel L. Volchenboum,Congmao Wang,George Wang,Xi Wang,Wolfram Weckwerth,Detlef Weigel,Xuefeng Zhou +55 more
TL;DR: Insights into the history of the species and the fine-scale distribution of genetic diversity provide the basis for full exploitation of A. thaliana natural variation through integration of genomes and epigenomes with molecular and non-molecular phenotypes.
Journal ArticleDOI
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu,Pedro Pattyn,E. G. Bakker,Jun Cao,Jan Fang Cheng,Richard M. Clark,Noah Fahlgren,Jeffrey A. Fawcett,Jane Grimwood,Heidrun Gundlach,Georg Haberer,Jesse D. Hollister,Stephan Ossowski,Robert P. Ottilar,Asaf Salamov,Korbinian Schneeberger,Manuel Spannagl,Xi-Mo Wang,Liang Yang,Mikhail E. Nasrallah,Joy Bergelson,James C. Carrington,Brandon S. Gaut,Jeremy Schmutz,Klaus F. X. Mayer,Yves Van de Peer,Igor V. Grigoriev,Magnus Nordborg,Magnus Nordborg,Detlef Weigel,Ya-Long Guo +30 more
TL;DR: The 207-Mb genome sequence of the North American Arabidopsis lyrata strain MN47, based on 8.3× dideoxy sequence coverage, is reported, indicating pervasive selection for a smaller genome in this outcrossing species.
Journal ArticleDOI
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana.
TL;DR: Results of a field experiment comparing the fitness of isogenic strains that differ in the presence or absence of RPM1 and its natural promoter reveal a large cost ofrpm1, providing the first evidence that costs contribute to the maintenance of an ancient R-gene polymorphism.