P
Pankaj Gupta
Researcher at St. Jude Children's Research Hospital
Publications - 21
Citations - 3730
Pankaj Gupta is an academic researcher from St. Jude Children's Research Hospital. The author has contributed to research in topics: Pediatric cancer & Mutation. The author has an hindex of 15, co-authored 21 publications receiving 3102 citations.
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Journal ArticleDOI
The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma
Gang Wu,Alexander K. Diaz,Alexander K. Diaz,Barbara S. Paugh,Sherri Rankin,Bensheng Ju,Yongjin Li,Xiaoyan Zhu,Chunxu Qu,Xiang Chen,Junyuan Zhang,John Easton,Michael N. Edmonson,Xiaotu Ma,Charles Lu,Panduka Nagahawatte,Erin Hedlund,Michael Rusch,Stanley Pounds,Tong Lin,Arzu Onar-Thomas,Robert Huether,Richard W. Kriwacki,Matthew Parker,Pankaj Gupta,Jared Becksfort,Lei Wei,Heather L. Mulder,Kristy Boggs,Bhavin Vadodaria,Donald Yergeau,Jake C. Russell,Kerri Ochoa,Robert S. Fulton,Lucinda Fulton,Chris Jones,Frederick A. Boop,Alberto Broniscer,Cynthia Wetmore,Amar Gajjar,Li Ding,Elaine R. Mardis,Richard K. Wilson,Michael R. Taylor,James R. Downing,David W. Ellison,Jinghui Zhang,Suzanne J. Baker,Suzanne J. Baker +48 more
TL;DR: In this article, the authors analyzed 127 pediatric HGGs, including diffuse intrinsic pontine gliomas (DIPGs) and non-brainstem HGG (NBS-HGGs), by whole-genome, whole-exome and/or transcriptome sequencing.
Journal ArticleDOI
Novel mutations target distinct subgroups of medulloblastoma
Giles W. Robinson,Matthew Parker,Tanya A. Kranenburg,Charles Lu,Charles Lu,Xiang Chen,Li Ding,Li Ding,Timothy N. Phoenix,Erin Hedlund,Lei Wei,Xiaoyan Zhu,Nader Chalhoub,Suzanne J. Baker,Robert Huether,Richard W. Kriwacki,Natasha Curley,Radhika Thiruvenkatam,Jianmin Wang,Gang Wu,Michael Rusch,Xin Hong,Xin Hong,Jared Becksfort,Pankaj Gupta,Jing Ma,John Easton,Bhavin Vadodaria,Arzu Onar-Thomas,Tong Lin,Shaoyi Li,Stanley Pounds,Steven W. Paugh,David Zhao,Daisuke Kawauchi,Martine F. Roussel,David Finkelstein,David W. Ellison,Ching C. Lau,Eric Bouffet,Tim Hassall,Tim Hassall,Sridharan Gururangan,Sridharan Gururangan,Richard J. Cohn,Richard J. Cohn,Robert S. Fulton,Robert S. Fulton,Lucinda L. Fulton,Lucinda L. Fulton,David J. Dooling,David J. Dooling,Kerri Ochoa,Kerri Ochoa,Amar Gajjar,Elaine R. Mardis,Richard K. Wilson,James R. Downing,Jinghui Zhang,Richard J. Gilbertson +59 more
TL;DR: Modelling of mutations in mouse lower rhombic lip progenitors that generate WNT-subgroup tumours identified genes that maintain this cell lineage (DDX3X), as well as mutated genes that initiate (CDH1) or cooperate (PIK3CA) in tumorigenesis.
Journal ArticleDOI
Genomic Landscape of Ewing Sarcoma Defines an Aggressive Subtype with Co-Association of STAG2 and TP53 Mutations
Franck Tirode,Didier Surdez,Xiaotu Ma,Matthew Parker,Marie-Cécile Le Deley,Armita Bahrami,Zhaojie Zhang,Eve Lapouble,Sandrine Grossetête-Lalami,Michael Rusch,Stéphanie Reynaud,Thomas Rio-Frio,Erin Hedlund,Gang Wu,Xiang Chen,Gaëlle Pierron,Odile Oberlin,Sakina Zaidi,Gordon Lemmon,Pankaj Gupta,Bhavin Vadodaria,John Easton,Marta Gut,Li Ding,Elaine R. Mardis,Richard K. Wilson,Sheila A. Shurtleff,Valérie Laurence,Jean Michon,Perrine Marec-Berard,Ivo Gut,James R. Downing,Michael A. Dyer,Michael A. Dyer,Jinghui Zhang,Olivier Delattre +35 more
TL;DR: Tumors that harbor STAG2 and TP53 mutations have a particularly dismal prognosis with current treatments and require alternative therapies, and novel drugs that target epigenetic regulators may constitute viable therapeutic strategies in a subset of patients with mutations in chromatin modifiers.
Journal ArticleDOI
The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias.
Anna Andersson,Anna Andersson,Jing Ma,Jianmin Wang,Xiang Chen,Amanda Larson Gedman,Jinjun Dang,Joy Nakitandwe,Linda Holmfeldt,Matthew Parker,John Easton,Robert Huether,Richard W. Kriwacki,Michael Rusch,Gang Wu,Yongjin Li,Heather L. Mulder,Susana C. Raimondi,Stanley Pounds,Guolian Kang,Lei Shi,Jared Becksfort,Pankaj Gupta,Debbie Payne-Turner,Bhavin Vadodaria,Kristy Boggs,Donald Yergeau,Jayanthi Manne,Guangchun Song,Michael N. Edmonson,Panduka Nagahawatte,Lei Wei,C. Cheng,Deqing Pei,Rosemary Sutton,Nicola C. Venn,Albert Chetcuti,Amanda Rush,Daniel Catchpoole,Jesper Heldrup,Thoas Fioretos,Charles Lu,Li Ding,Ching-Hon Pui,Sheila A. Shurtleff,Charles G. Mullighan,Elaine R. Mardis,Richard K. Wilson,Tanja A. Gruber,Jinghui Zhang,James R. Downing +50 more
TL;DR: Infant acute lymphoblastic leukemia (ALL) with MLL rearrangements (MLL-R) represents a distinct leukemia with a poor prognosis and has one of the lowest frequencies of somatic mutations of any sequenced cancer, with the predominant leukemic clone carrying a mean of 1.3 non-silent mutations.
Journal ArticleDOI
Genetic alterations in uncommon low-grade neuroepithelial tumors: BRAF, FGFR1, and MYB mutations occur at high frequency and align with morphology
Ibrahim Qaddoumi,Wilda Orisme,Ji Wen,Teresa Santiago,Kirti Gupta,James Dalton,Bo Tang,Kelly Haupfear,Chandanamali Punchihewa,John Easton,Heather L. Mulder,Kristy Boggs,Ying Shao,Michael Rusch,Jared Becksfort,Pankaj Gupta,Shuoguo Wang,Ryan P. Lee,Daniel J. Brat,V. Peter Collins,Sonika Dahiya,David George,William Konomos,Kathreena M Kurian,Kathryn McFadden,Luciano Neder Serafini,Hilary Highfield Nickols,Arie Perry,Sheila A. Shurtleff,Amar Gajjar,F.A. Boop,Paul Klimo,Elaine R. Mardis,Richard K. Wilson,Suzanne J. Baker,Jinghui Zhang,Gang Wu,James R. Downing,Ruth G. Tatevossian,David W. Ellison +39 more
TL;DR: Altered genes in BRAF, FGFR1, or MYB account for most pathogenic alterations in LGNTs, including pilocytic astrocytomas, and alignment of these genetic alterations and cytologic features acrossLGNTs has diagnostic implications.