P
Patrik Inderbitzin
Researcher at University of California, Davis
Publications - 55
Citations - 3223
Patrik Inderbitzin is an academic researcher from University of California, Davis. The author has contributed to research in topics: Verticillium & Verticillium wilt. The author has an hindex of 22, co-authored 53 publications receiving 2783 citations. Previous affiliations of Patrik Inderbitzin include City University of Hong Kong & Cornell University.
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Journal ArticleDOI
The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits
Conrad L. Schoch,Gi-Ho Sung,Francesc López-Giráldez,Jeffrey P. Townsend,Jolanta Miadlikowska,Valérie Hofstetter,Barbara Robbertse,P. Brandon Matheny,P. Brandon Matheny,Frank Kauff,Zheng Wang,Cécile Gueidan,Rachael M. Andrie,Kristin M. Trippe,Linda M. Ciufetti,Anja Amtoft Wynns,Emily Fraker,Brendan P. Hodkinson,Gregory Bonito,Johannes Z. Groenewald,Mahdi Arzanlou,Mahdi Arzanlou,G. Sybren de Hoog,Pedro W. Crous,David Hewitt,Donald H. Pfister,Kristin R. Peterson,Marieka Gryzenhout,Michael J. Wingfield,André Aptroot,Sung-Oui Suh,Meredith Blackwell,David M. Hillis,Gareth W. Griffith,Lisa A. Castlebury,Amy Y. Rossman,H. Thorsten Lumbsch,Robert Lücking,Burkhard Büdel,Alexandra Rauhut,Paul Diederich,Damien Ertz,David M. Geiser,Kentaro Hosaka,Patrik Inderbitzin,Jan Kohlmeyer,Brigitte Volkmann-Kohlmeyer,Lizel Mostert,Kerry O'Donnell,Harrie J. M. Sipman,Jack D. Rogers,R. A. Shoemaker,Junta Sugiyama,Richard C. Summerbell,Wendy A. Untereiner,Peter R. Johnston,Soili Stenroos,Alga Zuccaro,Paul S. Dyer,Peter D. Crittenden,Mariette S. Cole,Karen Hansen,James M. Trappe,Rebecca Yahr,Franois Lutzoni,Joseph W. Spatafora +65 more
TL;DR: A 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi, and a phylogenetic informativeness analysis of all 6 genes and a series of ancestral character state reconstructions support a terrestrial, saprobic ecology as ancestral are presented.
Journal ArticleDOI
Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens
Steven J. Klosterman,Krishna V. Subbarao,Seogchan Kang,Paola Veronese,Scott E. Gold,Bart P. H. J. Thomma,Zehua Chen,Bernard Henrissat,Yong-Hwan Lee,Jongsun Park,María D. García-Pedrajas,Dez J. Barbara,Amy Anchieta,Ronnie de Jonge,Parthasarathy Santhanam,Karunakaran Maruthachalam,Zahi K. Atallah,Stefan G. Amyotte,Zahi Paz,Patrik Inderbitzin,Ryan J. Hayes,David I. Heiman,Sarah Young,Qiandong Zeng,Reinhard Engels,James E. Galagan,Christina A. Cuomo,Katherine F. Dobinson,Katherine F. Dobinson,Li-Jun Ma,Li-Jun Ma +30 more
TL;DR: Insight is revealed into the genetic mechanisms of niche adaptation of fungal wilt pathogens, advances the understanding of the evolution and development of their pathogenesis, and sheds light on potential avenues for the development of novel disease management strategies to combat destructive wilt diseases.
Journal ArticleDOI
Finding needles in haystacks: Linking scientific names, reference specimens and molecular data for Fungi
Conrad L. Schoch,Barbara Robbertse,Vincent Robert,Duong Vu,Gianluigi Cardinali,Laszlo Irinyi,Wieland Meyer,R. Henrik Nilsson,Karen W. Hughes,Andrew N. Miller,Paul M. Kirk,Kessy Abarenkov,M. Catherine Aime,Hiran A. Ariyawansa,Martin I. Bidartondo,Teun Boekhout,Bart Buyck,Qing Cai,Jie Chen,Ana Crespo,Pedro W. Crous,Ulrike Damm,Z. Wilhelm de Beer,Bryn T. M. Dentinger,Pradeep K. Divakar,Margarita Dueñas,Nicolas Feau,Katerina Fliegerova,Miguel A. García,Zai-Wei Ge,Gareth W. Griffith,Johannes Z. Groenewald,Marizeth Groenewald,Martin Grube,Marieka Gryzenhout,Cécile Gueidan,Liang-Dong Guo,Sarah Hambleton,Richard C. Hamelin,Karen Hansen,Valérie Hofstetter,Seung-Beom Hong,Jos Houbraken,Kevin D. Hyde,Patrik Inderbitzin,Peter R. Johnston,Samantha C. Karunarathna,Urmas Kõljalg,Gábor M. Kovács,Gábor M. Kovács,Ekaphan Kraichak,Krisztina Krizsán,Cletus P. Kurtzman,Karl-Henrik Larsson,Steven D. Leavitt,Peter M. Letcher,Kare Liimatainen,Jian-Kui Liu,D. Jean Lodge,Janet Jennifer Luangsa-ard,H. Thorsten Lumbsch,Sajeewa S. N. Maharachchikumbura,Dimuthu S. Manamgoda,María P. Martín,Andrew M. Minnis,Jean-Marc Moncalvo,Giuseppina Mulè,Karen K. Nakasone,Tuula Niskanen,Ibai Olariaga,Tamás Papp,Tamás Petkovits,Raquel Pino-Bodas,Martha J. Powell,Huzefa A. Raja,Dirk Redecker,Jullie M. Sarmiento-Ramírez,Keith A. Seifert,Bhushan Shrestha,Soili Stenroos,B. Stielow,Sung-Oui Suh,Kazuaki Tanaka,Leho Tedersoo,M. Teresa Telleria,Dhanushka Udayanga,Wendy A. Untereiner,Javier Diéguez Uribeondo,Krishna V. Subbarao,Csaba Vágvölgyi,Cobus M. Visagie,Kerstin Voigt,Donald M. Walker,Bevan S. Weir,Michael Weiß,Nalin N. Wijayawardene,Michael J. Wingfield,Jianping Xu,Zhu L. Yang,Ning Zhang,Wen Ying Zhuang,Scott Federhen +101 more
TL;DR: A set of standards and protocols are proposed to improve the data quality of new sequences, and it is suggested how type and other reference sequences can be used to improve identification of Fungi.
Journal ArticleDOI
Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species.
Patrik Inderbitzin,Richard M. Bostock,R. Michael Davis,Toshiyuki Usami,H. W. Platt,Krishna V. Subbarao +5 more
TL;DR: A taxonomic framework for Verticillium is established comprising ten species, five of which are new to science, and each corresponded to a single clade in the phylogenetic tree comprising just one ex-type strain, thereby establishing a direct link to a name tied to a herbarium specimen.
Journal ArticleDOI
The Ascomycete Verticillium longisporum Is a Hybrid and a Plant Pathogen with an Expanded Host Range
TL;DR: This work confirmed that V. longisporum was diploid, and originated three different times, involving four different lineages and three different parental species, and focused on the causal agent of the Verticillium wilt disease in crucifer crops.