J
Jianping Xu
Researcher at McMaster University
Publications - 330
Citations - 15241
Jianping Xu is an academic researcher from McMaster University. The author has contributed to research in topics: Population & Cryptococcus neoformans. The author has an hindex of 49, co-authored 284 publications receiving 12161 citations. Previous affiliations of Jianping Xu include Hainan Medical University & University of Wisconsin-Madison.
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Journal ArticleDOI
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
Conrad L. Schoch,Keith A. Seifert,Sabine M. Huhndorf,Vincent Robert,John L. Spouge,C. André Lévesque,Wen Chen,Elena Bolchacova,Kerstin Voigt,Pedro W. Crous,Andrew N. Miller,Michael J. Wingfield,M. Catherine Aime,Kwang Deuk An,Feng-Yan Bai,Robert W. Barreto,Dominik Begerow,Marie Josée Bergeron,Meredith Blackwell,Teun Boekhout,Teun Boekhout,Mesfin Bogale,Nattawut Boonyuen,Ana Rosa Burgaz,Bart Buyck,Lei Cai,Qing Cai,Gianluigi Cardinali,Priscila Chaverri,Brian J. Coppins,Ana Crespo,Paloma Cubas,Craig Cummings,Ulrike Damm,Z. Wilhelm de Beer,G. Sybren de Hoog,Ruth Del-Prado,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Javier Diéguez-Uribeondo,Pradeep K. Divakar,Brian Douglas,Margarita Dueñas,Tuan A. Duong,Ursula Eberhardt,Joan E. Edwards,Mostafa S. Elshahed,Katerina Fliegerova,Manohar R. Furtado,Miguel A. García,Zai-Wei Ge,Gareth W. Griffith,K. Griffiths,Johannes Z. Groenewald,Marizeth Groenewald,Martin Grube,Marieka Gryzenhout,Liang-Dong Guo,Ferry Hagen,Sarah Hambleton,Richard C. Hamelin,Karen Hansen,Paul Harrold,Gregory Heller,Cesar S. Herrera,Kazuyuki Hirayama,Yuuri Hirooka,Hsiao Man Ho,Kerstin Hoffmann,Valérie Hofstetter,Filip Högnabba,Peter M. Hollingsworth,Seung-Beom Hong,Kentaro Hosaka,Jos Houbraken,Karen W. Hughes,Seppo Huhtinen,Kevin D. Hyde,Kevin D. Hyde,Timothy Y. James,Eric M. Johnson,Joan E. Johnson,Peter R. Johnston,E. B. Gareth Jones,Laura J. Kelly,Laura J. Kelly,Paul M. Kirk,Dániel G. Knapp,Urmas Kõljalg,Gábor M. Kovács,Cletus P. Kurtzman,Sara Landvik,Steven D. Leavitt,Audra S. Liggenstoffer,Kare Liimatainen,Lorenzo Lombard,J. Jennifer Luangsa-ard,H. Thorsten Lumbsch,Harinad Maganti,Sajeewa S. N. Maharachchikumbura,María P. Martín,Tom W. May,Alistair R. McTaggart,Andrew S. Methven,Wiel Meyer,Jean-Marc Moncalvo,Suchada Mongkolsamrit,László Nagy,R. Henrik Nilsson,Tuula Niskanen,Ildikó Nyilasi,Gen Okada,Izumi Okane,Ibai Olariaga,Jürgen Otte,Tamás Papp,Duckchul Park,Tamás Petkovits,Raquel Pino-Bodas,W. Quaedvlieg,Huzefa A. Raja,Dirk Redecker,Tara L. Rintoul,Constantino Ruibal,Jullie M. Sarmiento-Ramírez,Imke Schmitt,Imke Schmitt,Arthur Schüßler,Carol A. Shearer,Kozue Sotome,Franck O.P. Stefani,Soili Stenroos,B. Stielow,Herbert Stockinger,Satinee Suetrong,Sung-Oui Suh,Gi-Ho Sung,Motofumi Suzuki,Kazuaki Tanaka,Leho Tedersoo,M. Teresa Telleria,Eric D. Tretter,Wendy A. Untereiner,Hector Urbina,Csaba Vágvölgyi,Agathe Vialle,Thuy Duong Vu,Grit Walther,Qi Ming Wang,Yan Wang,Bevan S. Weir,Michael Weiß,Merlin M. White,Jianping Xu,Rebecca Yahr,Zhu L. Yang,Andrey Yurkov,Juan Carlos Zamora,Ning Zhang,Wen Ying Zhuang,David Schindel +160 more
TL;DR: Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation.
Journal ArticleDOI
Finding needles in haystacks: Linking scientific names, reference specimens and molecular data for Fungi
Conrad L. Schoch,Barbara Robbertse,Vincent Robert,Duong Vu,Gianluigi Cardinali,Laszlo Irinyi,Wieland Meyer,R. Henrik Nilsson,Karen W. Hughes,Andrew N. Miller,Paul M. Kirk,Kessy Abarenkov,M. Catherine Aime,Hiran A. Ariyawansa,Martin I. Bidartondo,Teun Boekhout,Bart Buyck,Qing Cai,Jie Chen,Ana Crespo,Pedro W. Crous,Ulrike Damm,Z. Wilhelm de Beer,Bryn T. M. Dentinger,Pradeep K. Divakar,Margarita Dueñas,Nicolas Feau,Katerina Fliegerova,Miguel A. García,Zai-Wei Ge,Gareth W. Griffith,Johannes Z. Groenewald,Marizeth Groenewald,Martin Grube,Marieka Gryzenhout,Cécile Gueidan,Liang-Dong Guo,Sarah Hambleton,Richard C. Hamelin,Karen Hansen,Valérie Hofstetter,Seung-Beom Hong,Jos Houbraken,Kevin D. Hyde,Patrik Inderbitzin,Peter R. Johnston,Samantha C. Karunarathna,Urmas Kõljalg,Gábor M. Kovács,Gábor M. Kovács,Ekaphan Kraichak,Krisztina Krizsán,Cletus P. Kurtzman,Karl-Henrik Larsson,Steven D. Leavitt,Peter M. Letcher,Kare Liimatainen,Jian-Kui Liu,D. Jean Lodge,Janet Jennifer Luangsa-ard,H. Thorsten Lumbsch,Sajeewa S. N. Maharachchikumbura,Dimuthu S. Manamgoda,María P. Martín,Andrew M. Minnis,Jean-Marc Moncalvo,Giuseppina Mulè,Karen K. Nakasone,Tuula Niskanen,Ibai Olariaga,Tamás Papp,Tamás Petkovits,Raquel Pino-Bodas,Martha J. Powell,Huzefa A. Raja,Dirk Redecker,Jullie M. Sarmiento-Ramírez,Keith A. Seifert,Bhushan Shrestha,Soili Stenroos,B. Stielow,Sung-Oui Suh,Kazuaki Tanaka,Leho Tedersoo,M. Teresa Telleria,Dhanushka Udayanga,Wendy A. Untereiner,Javier Diéguez Uribeondo,Krishna V. Subbarao,Csaba Vágvölgyi,Cobus M. Visagie,Kerstin Voigt,Donald M. Walker,Bevan S. Weir,Michael Weiß,Nalin N. Wijayawardene,Michael J. Wingfield,Jianping Xu,Zhu L. Yang,Ning Zhang,Wen Ying Zhuang,Scott Federhen +101 more
TL;DR: A set of standards and protocols are proposed to improve the data quality of new sequences, and it is suggested how type and other reference sequences can be used to improve identification of Fungi.
Journal ArticleDOI
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
Emmanuelle Morin,Annegret Kohler,Adam Baker,Marie Foulongne-Oriol,Vincent Lombard,László Nagy,Robin A. Ohm,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Annick Brun,Andrea Aerts,Andy M. Bailey,Christophe Billette,Pedro M. Coutinho,Greg Deakin,Harshavardhan Doddapaneni,Dimitrios Floudas,Jane Grimwood,Kristiina Hildén,Ursula Kües,Kurt LaButti,Alla Lapidus,Erika Lindquist,Susan Lucas,Claude Murat,Robert Riley,Asaf Salamov,Jeremy Schmutz,Venkataramanan Subramanian,Han A. B. Wösten,Jianping Xu,Daniel C. Eastwood,Gary D. Foster,Anton S.M. Sonnenberg,Dan Cullen,Ronald P. de Vries,Taina Lundell,David S. Hibbett,Bernard Henrissat,Kerry S. Burton,Richard W. Kerrigan,Michael P. Challen,Igor V. Grigoriev,Francis Martin +43 more
TL;DR: Observations reveal genetic and enzymatic mechanisms governing adaptation to the humic-rich ecological niche formed during plant degradation, further defining the critical role such fungi contribute to soil structure and carbon sequestration in terrestrial ecosystems.
Journal ArticleDOI
The Case for Adopting the "Species Complex" Nomenclature for the Etiologic Agents of Cryptococcosis.
Kyung J. Kwon-Chung,John E. Bennett,Brian L. Wickes,Wieland Meyer,Christina A. Cuomo,Kurt R. Wollenburg,Tihana Bicanic,Elizabeth Castañeda,Yun C. Chang,Jianghan Chen,Massimo Cogliati,Françoise Dromer,David Ellis,Scott G. Filler,Matthew C. Fisher,Thomas S. Harrison,Steven M. Holland,Shigeru Kohno,James W. Kronstad,Márcia dos Santos Lazéra,Stuart M. Levitz,Michail S. Lionakis,Robin C. May,Popchai Ngamskulrongroj,Peter G. Pappas,John R. Perfect,Volker Rickerts,Tania C. Sorrell,Thomas J. Walsh,Peter R. Williamson,Jianping Xu,Adrian M. Zelazny,Arturo Casadevall +32 more
TL;DR: In the absence of biological differences between clades and no consensus about how DNA sequence alone can delineate a species, it is recommended to use “Cryptococcus neoformans species complex” and “C. gattii speciescomplex” as a practical intermediate step, rather than creating more species.
Journal ArticleDOI
Quantitative variation of biofilms among strains in natural populations of Candida albicans.
Xiaogang Li,Zhun Yan,Jianping Xu +2 more
TL;DR: The results demonstrated that natural clones and clonal lineages of C. albicans exhibited extensive quantitative variation in biofilm formation, and was positively correlated with cell surface hydrophobicity.