T
Taibo Li
Researcher at Johns Hopkins University School of Medicine
Publications - 35
Citations - 1123
Taibo Li is an academic researcher from Johns Hopkins University School of Medicine. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 11, co-authored 27 publications receiving 776 citations. Previous affiliations of Taibo Li include University of Cambridge & Massachusetts Eye and Ear Infirmary.
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Journal ArticleDOI
A scored human protein–protein interaction network to catalyze genomic interpretation
Taibo Li,Rasmus Wernersson,Rasmus Borup Hansen,Heiko Horn,Heiko Horn,Johnathan Mercer,Johnathan Mercer,Grzegorz Slodkowicz,Christopher T. Workman,Olga Rigina,Kristoffer Rapacki,Hans Henrik Stærfeldt,Søren Brunak,Thomas Skøt Jensen,Kasper Lage +14 more
TL;DR: It is illustrated that InWeb_InBioMap enables functional interpretation of >4,700 cancer genomes and genes involved in autism and better functional biological relevance than comparable resources.
Posted ContentDOI
The Multiple Sclerosis Genomic Map: Role of peripheral immune cells and resident microglia in susceptibility
Nikolaos A. Patsopoulos,Sergio E. Baranzini,Adam Santaniello,Shoostari P,Chris Cotsapas,Wong G,Ashley Beecham,Tojo James,Replogle J,Ioannis S. Vlachos,Cristin McCabe,Tune H. Pers,Brandes A,Charles C. White,Brendan T. Keenan,Maria Cimpean,Winn P,Panteliadis I,Robbins A,Till F. M. Andlauer,Zarzycki O,Bénédicte Dubois,An Goris,Helle Bach Søndergaard,Finn Sellebjerg,Per Soelberg Sørensen,Henrik Ullum,Thoerner Lw,Janna Saarela,Rebeix Ic,Damotte,Bertrand Fontaine,Noel Lg,Mark Lathrop,Sandra Vukusik,Achim Berthele,Biberacher,Dorothea Buck,Christiane Gasperi,Christiane Graetz,Grummel,B. Hemmer,M.-M. Hoshi,Benjamin Knier,Thomas Korn,Christina M. Lill,Felix Luessi,Mark Mühlau,Frauke Zipp,Efthimios Dardiotis,Cristina Agliardi,Amoroso A,Nadia Barizzone,Benedetti M,Luisa Bernardinelli,Paola Cavalla,Ferdinando Clarelli,G. Comi,Daniele Cusi,Federica Esposito,Laura Ferrè,Daniela Galimberti,Clara Guaschino,Maurizio Leone,Martinelli,Moiola L,Marco Salvetti,Melissa Sorosina,Domizia Vecchio,Andrea Zauli,Silvia Santoro,Zuccalà M,Julia Y Mescheriakova,Duijn Cv,Steffan D. Bos,Elisabeth Gulowsen Celius,Anne Spurkland,Manuel Comabella,Xavier Montalban,Lars Alfredsson,Izaura Lima Bomfim,David Gomez-Cabrero,Jan Hillert,Maja Jagodic,M Lindén,Fredrik Piehl,Ilijas Jelcic,Roland Martin,Mireia Sospedra,Amie Baker,Maria Ban,Clive Hawkins,Hysi P,Seema Kalra,Fredrik Karpe,Jyoti Khadake,Genevieve Lachance,Molyneux P,Megan C Neville,J W Thorpe,Elizabeth M. Bradshaw,Stacy J. Caillier,Peter A. Calabresi,B. Cree,Anne H. Cross,Mary F. Davis,Bakker Pd,Silvia Delgado,Marieme Dembele,Keith R Edwards,Kathryn C. Fitzgerald,Frohlich I,Pierre-Antoine F. D. Gourraud,Jonathan L. Haines,Hakon Hakonarson,Dorlan J. Kimbrough,Noriko Isobe,Ioanna Konidari,Ellen Lathi,Marcus C. S. Lee,Taibo Li,An D,Zimmer A,Lo A,Lohith Madireddy,Clara P. Manrique,Mitja Mitrovic,Marta Olah,Ellis Patrick,Margaret A. Pericak-Vance,Laura Piccio,Cathy Schaefer,Howard L. Weiner,Kasper Lage,A Compston,David A. Hafler,Hanne F. Harbo,Stephen L. Hauser,Graeme J. Stewart,Sandra D'Alfonso,Giorgos M. Hadjigeorgiou,Bruce V. Taylor,Lisa F. Barcellos,David R. Booth,Rogier Q. Hintzen,Ingrid Kockum,Filippo Martinelli-Boneschi,Jacob L. McCauley,Jorge R. Oksenberg,Annette Bang Oturai,Stephen Sawcer,Ivinson A,Tommy Olsson,Phil De Jager,Murray L. Barclay,Laurent Peyrin-Biroulet,Mathias Chamaillard,Colombe J,Cottone M,Croft A,Renata D'Incà,Jonas Halfvarson,Hanigan K,Paul Henderson,Paul Henderson,Jean-Pierre Hugot,Jean-Pierre Hugot,Karban A,Nicholas A. Kennedy,Khan Ma,Marc Lémann,Arie Levine,Massey D,Monica Milla,Grant W. Montgomery,Evelyn Ng Sm,I. Oikonomou,Harald Peeters,Deborah D. Proctor,Jean-François Rahier,Roberts R,Paul Rutgeerts,Frank Seibold,Stronati L,Taylor Km,Törkvist L,Ublick K,Johan Van Limbergen,Gossum Av,Vatn Mh,Zhang H,Zhang W +191 more
TL;DR: While MS is most likely initially triggered by perturbation of peripheral immune responses the functional responses of microglia and other brain cells are also altered and may have a role in targeting an autoimmune process to the central nervous system.
Posted ContentDOI
Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases
Elle M. Weeks,Jacob C. Ulirsch,Jacob C. Ulirsch,Nathan Cheng,Brian L. Trippe,Rebecca S. Fine,Jenkai Miao,Jenkai Miao,Tejal A. Patwardhan,Tejal A. Patwardhan,Masahiro Kanai,Joseph Nasser,Charles P. Fulco,Charles P. Fulco,Katherine Tashman,François Aguet,Taibo Li,Taibo Li,Jose Ordovas-Montanes,Christopher Smillie,Christopher Smillie,Moshe Biton,Moshe Biton,Alex K. Shalek,Ashwin N. Ananthakrishnan,Ramnik J. Xavier,Aviv Regev,Rajat M. Gupta,Rajat M. Gupta,Rajat M. Gupta,Kasper Lage,Kristin G. Ardlie,Kristin G. Ardlie,Joel N. Hirschhorn,Eric S. Lander,Eric S. Lander,Eric S. Lander,Jesse M. Engreitz,Jesse M. Engreitz,Hilary K. Finucane +39 more
TL;DR: A new method to identify the causal genes by integrating GWAS summary statistics with gene expression, biological pathway, and predicted protein-protein interaction data is introduced, demonstrating that a polygenic approach is a powerful tool for gene prioritization and, in combination with locus-specific signal, improves upon existing methods.
Journal ArticleDOI
Distinct subnetworks of the thalamic reticular nucleus.
Yinqing Li,Yinqing Li,Violeta G. Lopez-Huerta,Violeta G. Lopez-Huerta,Violeta G. Lopez-Huerta,Xian Adiconis,Kirsten Levandowski,Kirsten Levandowski,Soon-Wook Choi,Soon-Wook Choi,Sean Simmons,Mario A. Arias-Garcia,Mario A. Arias-Garcia,Mario A. Arias-Garcia,Baolin Guo,Baolin Guo,Annie Y. Yao,Annie Y. Yao,Timothy R. Blosser,Timothy R. Blosser,Ralf D. Wimmer,Tomomi Aida,Tomomi Aida,Alexander Atamian,Alexander Atamian,Tina Naik,Tina Naik,X. M. Sun,X. M. Sun,Dasheng Bi,Diya Malhotra,Diya Malhotra,Cynthia C. Hession,Reut Shema,Reut Shema,Marcos António Gomes,Marcos António Gomes,Taibo Li,Taibo Li,Eunjin Hwang,Alexandra Krol,Monika S. Kowalczyk,João Peça,Gang Pan,Michael M. Halassa,Joshua Z. Levin,Zhanyan Fu,Zhanyan Fu,Guoping Feng,Guoping Feng +49 more
TL;DR: A study integrating single-cell RNA-sequencing and electrophysiology data shows that in mouse, the cellular repertoire of the thalamic reticular nucleus is characterized by a transcriptomic gradient defined at its extremes by mutually exclusive expression of Spp1 and Ecel1, providing insights into the organizational principles underlying the divergent functions of this brain region.
Journal ArticleDOI
Replacement Gene Therapy with a Human RPGRIP1 Sequence Slows Photoreceptor Degeneration in a Murine Model of Leber Congenital Amaurosis
Basil S. Pawlyk,O. V. Bulgakov,Xiao-Qing Liu,Xiaoyun Xu,Michael Adamian,Xun Sun,Shahrokh C. Khani,Eliot L. Berson,Michael A. Sandberg,Taibo Li +9 more
TL;DR: In this paper, the authors evaluated the efficacy of replacement gene therapy in a murine model of Leber congenital amaurosis (LCA) carrying a targeted disruption of RPGRIP1.