T
Tiago Antao
Researcher at University of Montana
Publications - 46
Citations - 7570
Tiago Antao is an academic researcher from University of Montana. The author has contributed to research in topics: Population & Effective population size. The author has an hindex of 23, co-authored 46 publications receiving 6182 citations. Previous affiliations of Tiago Antao include Walter and Eliza Hall Institute of Medical Research & Universidade Nova de Lisboa.
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Journal ArticleDOI
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock,Tiago Antao,Jeffrey T. Chang,Brad Chapman,Cymon J. Cox,Andrew Dalke,Iddo Friedberg,Thomas Hamelryck,Frank Kauff,Bartosz Wilczyński,Michiel J. L. de Hoon +10 more
TL;DR: Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning.
Journal ArticleDOI
LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method
TL;DR: This work presents LOSITAN, a selection detection workbench based on a well evaluated Fst-outlier detection method that greatly facilitates correct approximation of model parameters, provides data import and export functions, iterative contour smoothing and generation of graphics in a easy to use graphical user interface.
Journal ArticleDOI
Genomic analyses inform on migration events during the peopling of Eurasia
Luca Pagani,Luca Pagani,Luca Pagani,Daniel Lawson,Evelyn Jagoda,Evelyn Jagoda,Alexander Mörseburg,Anders Eriksson,Anders Eriksson,Mario Mitt,Florian Clemente,Florian Clemente,Georgi Hudjashov,Georgi Hudjashov,Georgi Hudjashov,Michael DeGiorgio,Lauri Saag,Jeffrey D. Wall,Alexia Cardona,Reedik Mägi,Melissa A. Wilson Sayres,Melissa A. Wilson Sayres,Sarah Kaewert,Charlotte E. Inchley,Christiana L. Scheib,Mari Järve,Monika Karmin,Monika Karmin,Monika Karmin,Guy S. Jacobs,Tiago Antao,Florin Mircea Iliescu,Alena Kushniarevich,Alena Kushniarevich,Qasim Ayub,Chris Tyler-Smith,Yali Xue,Bayazit Yunusbayev,Kristiina Tambets,Chandana Basu Mallick,Lehti Saag,Elvira Pocheshkhova,George Andriadze,Craig Muller,Michael C. Westaway,David M. Lambert,Grigor Zoraqi,Shahlo Turdikulova,Dilbar Dalimova,Zhaxylyk Sabitov,Gazi Nurun Nahar Sultana,Joseph Lachance,Joseph Lachance,Sarah A. Tishkoff,Kuvat T. Momynaliev,Jainagul Isakova,Larisa Damba,Marina Gubina,Pagbajabyn Nymadawa,Irina Evseeva,L. A. Atramentova,Olga Utevska,François-Xavier Ricaut,Nicolas Brucato,Herawati Sudoyo,Thierry Letellier,Murray P. Cox,Nikolay A. Barashkov,Vedrana Škaro,Lejla Mulahasanovic,Dragan Primorac,Hovhannes Sahakyan,Hovhannes Sahakyan,Maru Mormina,Christina A. Eichstaedt,Christina A. Eichstaedt,Daria V. Lichman,Daria V. Lichman,S M Abdullah,Gyaneshwer Chaubey,Joseph Wee,Evelin Mihailov,A. S. Karunas,Sergei Litvinov,Sergei Litvinov,Rita Khusainova,N. V. Ekomasova,V. L. Akhmetova,I. M. Khidiyatova,Damir Marjanović,Levon Yepiskoposyan,Doron M. Behar,Elena Balanovska,Andres Metspalu,Miroslava Derenko,Boris Malyarchuk,Mikhail Voevoda,Mikhail Voevoda,Mikhail Voevoda,Sardana A. Fedorova,Ludmila P. Osipova,Ludmila P. Osipova,Marta Mirazón Lahr,Pascale Gerbault,Matthew Leavesley,Matthew Leavesley,Andrea Bamberg Migliano,Michael D. Petraglia,Oleg Balanovsky,Elza Khusnutdinova,Ene Metspalu,Ene Metspalu,Mark G. Thomas,Andrea Manica,Rasmus Nielsen,Richard Villems,Richard Villems,Richard Villems,Eske Willerslev,Toomas Kivisild,Toomas Kivisild,Mait Metspalu +121 more
TL;DR: A genetic signature in present-day Papuans that suggests that at least 2% of their genome originates from an early and largely extinct expansion of anatomically modern humans (AMHs) out of Africa earlier than 75,000 years ago is found.
Journal ArticleDOI
Effects of Overlapping Generations on Linkage Disequilibrium Estimates of Effective Population Size
TL;DR: This study simulated genetic data for 21 iteroparous animal and plant species to evaluate two untested hypotheses regarding performance of the single-sample method based on linkage disequilibrium (LD), and shows that single-cohort samples should be equally influenced by Nb and Ne.
Journal ArticleDOI
Genetic diversity of the African malaria vector Anopheles gambiae.
Alistair Miles,Alistair Miles,Nicholas J. Harding,Giordano Bottà,Giordano Bottà,Chris S Clarkson,Chris S Clarkson,Tiago Antao,Tiago Antao,Tiago Antao,Krzysztof Kozak,Daniel R. Schrider,Andrew D. Kern,Seth Redmond,Igor V. Sharakhov,Igor V. Sharakhov,Richard D. Pearson,Richard D. Pearson,Christina M. Bergey,Michael C. Fontaine,Martin J. Donnelly,Martin J. Donnelly,Mara K. N. Lawniczak,Diego Ayala,Nora J. Besansky,Austin Burt,Beniamino Caputo,Alessandra della Torre,H. Charles J. Godfray,Matthew W. Hahn,Janet Midega,Daniel E. Neafsey,Samantha M. O’Loughlin,João Pinto,Michelle M. Riehle,Kenneth D. Vernick,David Weetman,Craig S. Wilding,Craig S. Wilding,Bradley J. White,Arlete D. Troco,Abdoulaye Diabaté,Carlo Costantini,Kyanne R. Rohatgi,Nohal Elissa,Boubacar Coulibaly,Joao Dinis,Charles M. Mbogo,Philip Bejon,Henry D. Mawejje,Jim Stalker,Kirk A. Rockett,Eleanor Drury,Daniel Mead,Anna E. Jeffreys,Christina Hubbart,Kate Rowlands,Alison T. Isaacs,Dushyanth Jyothi,Cinzia Malangone,Paul Vauterin,Ben Jeffery,Ian J. Wright,Lee Hart,Krzysztof Kluczynski,Victoria Cornelius,Bronwyn MacInnis,Christa Henrichs,Rachel Giacomantonio,Dominic P. Kwiatkowski,Dominic P. Kwiatkowski +70 more
TL;DR: These data revealed complex population structure and patterns of gene flow, with evidence of ancient expansions, recent bottlenecks, and local variation in effective population size.