Showing papers by "University of St Andrews published in 2001"

The 2dF Galaxy Redshift Survey: spectra and redshifts

Abstract: The 2dF Galaxy Redshift Survey (2dFGRS) is designed to measure redshifts for approximately 250 000 galaxies. This paper describes the survey design, the spectroscopic observations, the redshift measurements and the survey data base. The 2dFGRS uses the 2dF multifibre spectrograph on the Anglo-Australian Telescope, which is capable of observing 400 objects simultaneously over a 2° diameter field. The source catalogue for the survey is a revised and extended version of the APM galaxy catalogue, and the targets are galaxies with extinction-corrected magnitudes brighter than b J = 19.45. The main survey regions are two declination strips, one in the southern Galactic hemisphere spanning 80° × 15° around the SGP, and the other in the northern Galactic hemisphere spanning 75° × 10° along the celestial equator; in addition, there are 99 fields spread over the southern Galactic cap. The survey covers 2000 deg 2 and has a median depth of z = 0.11. Adaptive tiling is used to give a highly uniform sampling rate of 93 per cent over the whole survey region. Redshifts are measured from spectra covering 3600-8000 A at a two-pixel resolution of 9.0 A and a median S/N of 13 pixel - 1 . All redshift identifications are visually checked and assigned a quality parameter Q in the range 1-5; Q ≥ 3 redshifts are 98.4 per cent reliable and have an rms uncertainty of 85 km s - 1 . The overall redshift completeness for Q ≥ 3 redshifts is 91.8 per cent, but this varies with magnitude from 99 per cent for the brightest galaxies to 90 per cent for objects at the survey limit. The 2dFGRS data base is available on the World Wide Web at http://www. mso.anu.edu.au/2dFGRS.

The 2dF galaxy redshift survey: near-infrared galaxy luminosity functions

Abstract: We combine the Two Micron All Sky Survey (2MASS) Extended Source Catalogue and the 2dF Galaxy Redshift Survey to produce an infrared selected galaxy catalogue with 17 173 measured redshifts. We use this extensive data set to estimate the galaxy luminosity functions in the J- and KS-bands. The luminosity functions are fairly well fitted by Schechter functions with parameters MJ*−5 log h=−22.36±0.02, αJ=−0.93±0.04, ΦJ*=0.0104±0.0016 h3 Mpc3 in the J-band and MKS*−5 log h=−23.44±0.03, αKS=−0.96±0.05, ΦKS*=0.0108±0.0016 h3 Mpc3 in the KS-band (2MASS Kron magnitudes). These parameters are derived assuming a cosmological model with Ω0=0.3 and Λ0=0.7. With data sets of this size, systematic rather than random errors are the dominant source of uncertainty in the determination of the luminosity function. We carry out a careful investigation of possible systematic effects in our data. The surface brightness distribution of the sample shows no evidence that significant numbers of low surface brightness or compact galaxies are missed by the survey. We estimate the present-day distributions of bJ−KS and J−KS colours as a function of the absolute magnitude and use models of the galaxy stellar populations, constrained by the observed optical and infrared colours, to infer the galaxy stellar mass function. Integrated over all galaxy masses, this yields a total mass fraction in stars (in units of the critical mass density) of Ωstarsh =(1.6±0.24)×103 for a Kennicutt initial mass function (IMF) and Ωstarsh =(2.9±0.43)×103 for a Salpeter IMF. These values are consistent with those inferred from observational estimates of the total star formation history of the Universe provided that dust extinction corrections are modest.

Controlled rotation of optically trapped microscopic particles.

Abstract: We demonstrate controlled rotation of optically trapped objects in a spiral interference pattern. This pattern is generated by interfering an annular shaped laser beam with a reference beam. Objects are trapped in the spiral arms of the pattern. Changing the optical path length causes this pattern, and thus the trapped objects, to rotate. Structures of silica microspheres, microscopic glass rods, and chromosomes are set into rotation at rates in excess of 5 hertz. This technique does not depend on intrinsic properties of the trapped particle and thus offers important applications in optical and biological micromachines.

Ionic conductivity in crystalline polymer electrolytes

Abstract: Polymer electrolytes are the subject of intensive study, in part because of their potential use as the electrolyte in all-solid-state rechargeable lithium batteries. These materials are formed by dissolving a salt (for example LiI) in a solid host polymer such as poly(ethylene oxide) (refs 2, 3, 4, 5, 6), and may be prepared as both crystalline and amorphous phases. Conductivity in polymer electrolytes has long been viewed as confined to the amorphous phase above the glass transition temperature, Tg, where polymer chain motion creates a dynamic, disordered environment that plays a critical role in facilitating ion transport. Here we show that, in contrast to this prevailing view, ionic conductivity in the static, ordered environment of the crystalline phase can be greater than that in the equivalent amorphous material above Tg. Moreover, we demonstrate that ion transport in crystalline polymer electrolytes can be dominated by the cations, whereas both ions are generally mobile in the amorphous phase. Restriction of mobility to the lithium cation is advantageous for battery applications. The realization that order can promote ion transport in polymers is interesting in the context of electronically conducting polymers, where crystallinity favours electron transport.

The 2dF Galaxy Redshift Survey: the power spectrum and the matter content of the Universe

Abstract: The 2dF Galaxy Redshift Survey has now measured in excess of 160 000 galaxy redshifts. This paper presents the power spectrum of the galaxy distribution, calculated using a direct Fourier transform based technique. We argue that, within the k-space region 0.02 less than or similar to k less than or similar to 0.15 h Mpc(-1), the shape of this spectrum should be close to that of the linear density perturbations convolved with the window function of the survey. This window function and its convolving effect on the power spectrum estimate are analysed in detail. By convolving model spectra, we are able to fit the power-spectrum data and provide a measure of the matter content of the Universe. Our results show that models containing baryon oscillations are mildly preferred over featureless power spectra. Analysis of the data yields 68 per cent confidence limits on the total matter density times the Hubble parameter Omega (m) h = 0.20 +/- 0.03, and the baryon fraction Omega (b)/Omega (m) = 0.15 +/- 0.07, assuming scale-invariant primordial fluctuations.

Analysis of the aphthovirus 2A/2B polyprotein 'cleavage' mechanism indicates not a proteolytic reaction, but a novel translational effect: a putative ribosomal 'skip'.

Abstract: The 2A region of the aphthovirus foot-and-mouth disease virus (FMDV) polyprotein is only 18 aa long. A ‘primary’ intramolecular polyprotein processing event mediated by 2A occurs at its own C terminus. FMDV 2A activity was studied in artificial polyproteins in which sequences encoding reporter proteins flanked the 2A sequence such that a single, long, open reading frame was created. The self-processing properties of these artificial polyproteins were investigated and the co-translational ‘cleavage’ products quantified. The processing products from our artificial polyprotein systems showed a molar excess of ‘cleavage’ product N-terminal of 2A over the product C-terminal of 2A. A series of experiments was performed to characterize our in vitro translation systems. These experiments eliminated the translational or transcriptional properties of the in vitro systems as an explanation for this imbalance. In addition, the processing products derived from a control construct encoding the P1P2 region of the human rhinovirus polyprotein, known to be proteolytically processed, were quantified and found to be equimolar. Translation of a construct encoding green fluorescent protein (GFP), FMDV 2A and β-glucuronidase, also in a single open reading frame, in the presence of puromycin, showed this antibiotic to be preferentially incorporated into the [GFP2A] translation product. We conclude that the discrete translation products from our artificial polyproteins are not produced by proteolysis. We propose that the FMDV 2A sequence, rather than representing a proteolytic element, modifies the activity of the ribosome to promote hydrolysis of the peptidyl(2A)-tRNAGly ester linkage, thereby releasing the polypeptide from the translational complex, in a manner that allows the synthesis of a discrete downstream translation product to proceed. This process produces a ribosomal ‘skip’ from one codon to the next without the formation of a peptide bond.

Model uncertainty in cross‐country growth regressions

Abstract: Summary We investigate the issue of model uncertainty in cross-country growth regressions using Bayesian Model Averaging (BMA) We flnd that the posterior probability is very spread among many models suggesting the superiority of BMA over choosing any single model Out-of-sample predictive results support this claim In contrast with Levine and Renelt (1992), our results broadly support the more \optimistic" conclusion of Sala-i-Martin (1997b), namely that some variables are important regressors for explaining cross-country growth patterns However, care should be taken in the methodology employed The approach proposed here is flrmly grounded in statistical theory and immediately leads to posterior and predictive inference

A selective impairment in the processing of sad and fearful expressions in children with psychopathic tendencies.

Abstract: The processing of emotional expressions is fundamental for normal socialisation and interaction. Reduced responsiveness to the expressions of sadness and fear has been implicated in the development of psychopathy (R. J. R. Blair, 1995). The current study investigates the sensitivity of children with psychopathic tendencies to facial expressions. Children with psychopathic tendencies and a comparison group, as defined by the Psychopathy Screening Device (PSD; P. J. Frick & R. D. Hare, in press), were presented with a cinematic display of a standardised set of facial expressions that depicted sadness, happiness, anger, disgust, fear, and surprise. Participants observed as these facial expressions slowly evolved through 20 successive frames of increasing intensity. The children with psychopathic tendencies presented with selective impairments; they needed significantly more stages before they could successfully recognise the sad expressions and even when the fearful expressions were at full intensity were significantly more likely to mistake them for another expression. These results are interpreted with reference to an amygdala and empathy impairment explanation of psychopathy.

The SuperCOSMOS Sky Survey – I. Introduction and description

Abstract: In this, the first in a series of three papers concerning the SuperCOSMOS Sky Survey (SSS), we give an introduction and user guide to the survey programme. We briefly describe other wide-field surveys and compare them with our own. We give examples of the data, and make a comparison of the accuracies of the various image parameters available with those from the other surveys providing similar data; we show that the SSS data base and interface offer advantages over these surveys. Some science applications of the data are also described and some limitations discussed. The series of three papers constitutes a comprehensive description and user guide for the SSS.

A measurement of the cosmological mass density from clustering in the 2dF Galaxy Redshift Survey

Abstract: The large-scale structure in the distribution of galaxies is thought to arise from the gravitational instability of small fluctuations in the initial density field of the Universe. A key test of this hypothesis is that forming superclusters of galaxies should generate a systematic infall of other galaxies. This would be evident in the pattern of recessional velocities, causing an anisotropy in the inferred spatial clustering of galaxies. Here we report a precise measurement of this clustering, using the redshifts of more than 141,000 galaxies from the two-degree-field (2dF) galaxy redshift survey. We determine the parameter β = Ω ^(0.6)/b = 0.43 ± 0.07, where Ω is the total mass-density parameter of the Universe and b is a measure of the 'bias' of the luminous galaxies in the survey. (Bias is the difference between the clustering of visible galaxies and of the total mass, most of which is dark.) Combined with the anisotropy of the cosmic microwave background, our results favour a low-density Universe with Ω ≈ 0.3.

Competitive accretion in embedded stellar clusters

Abstract: We investigate the physics of gas accretion in young stellar clusters. Accretion in clusters is a dynamic phenomenon as both the stars and the gas respond to the same gravitational potential. Accretion rates are highly non-uniform with stars nearer the centre of the cluster, where gas densities are higher, accreting more than others. This competitive accretion naturally results in both initial mass segregation and a spectrum of stellar masses. Accretion in gas-dominated clusters is well modelled using a tidal-lobe radius instead of the commonly used Bondi–Hoyle accretion radius. This works as both the stellar and gas velocities are under the influence of the same gravitational potential and are thus comparable. The low relative velocity which results means that Rtidal

The SuperCOSMOS Sky Survey. Paper I: Introduction and Description

Abstract: In this, the first in a series of three papers concerning the SuperCOSMOS Sky Survey (SSS), we give an introduction and user guide to the survey programme. We briefly describe other wide-field surveys and compare with our own. We give examples of the data, and make a comparison of the accuracies of the various image parameters available with those from the other surveys providing similar data; we show that the SSS database and interface offer advantages over these surveys. Some science applications of the data are also described and some limitations discussed. The series of three papers constitutes a comprehensive description and user guide for the SSS.

The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences.

Abstract: The 2A/2B cleavage of aphtho- and cardiovirus 2A polyproteins is mediated by their 2A proteins ‘cleaving’ at their own C termini. We have analysed this activity using artificial reporter polyprotein systems comprising green fluorescent protein (GFP) linked via foot-and-mouth disease virus (FMDV) 2A to β-glucuronidase (GUS) – forming a single, long, open reading frame. Analysis of the distribution of radiolabel showed a high proportion of the in vitro translation products (∼90%) were in the form of the ‘cleavage’ products GUS and [GFP2A]. Alternative models have been proposed to account for the ‘cleavage’ activity: proteolysis by a host-cell proteinase, autoproteolysis or a translational effect. To investigate the mechanism of this cleavage event constructs encoding site-directed mutant and naturally occurring ‘2A-like’ sequences were used to program in vitro translation systems and the gel profiles analysed. Analysis of site-directed mutant 2A sequences showed that ‘cleavage’ occurred in constructs in which all the candidate nucleophilic residues were substituted – with the exception of aspartate-12. This residue is not, however, conserved amongst all functional ‘2A-like’ sequences. ‘2A-like’ sequences were identified within insect virus polyproteins, the NS34 protein of type C rotaviruses, repeated sequences in Trypanosoma spp. and a eubacterial α-glucosiduronasesequence(Thermatoga maritima aguA). All of the 2A-like sequences analysed were active (to various extents), other than the eubacterial α-glucosiduronase 2A-like sequence. This method of control of protein biogenesis may well not, therefore, be confined to members of the Picornaviridae. Taken together, these data provide additional evidence that neither FMDV 2A nor ‘2A-like’ sequences are autoproteolytic elements.

The 2dF Galaxy Redshift Survey: luminosity dependence of galaxy clustering

Abstract: We investigate the dependence of the strength of galaxy clustering on intrinsic luminos- ity using the Anglo-Australian two degree field galaxy redshift survey (2dFGRS). The 2dFGRS is over an order of magnitude larger than previous redshift surveys used to address this issue. We measure the projected two-point correlation function of galax- ies in a series of volume-limited samples. The projected correlation function is free from any distortion of the clustering pattern induced by peculiar motions and is well described by a power-law in pair separation over the range 0.1 < (r/h 1 Mpc) < 10. The clustering of L � (MbJ 5log10 h = 19.7) galaxies in real space is well fit by a correlation length r0 = 4.9 ± 0.3h 1 Mpc and power-law slope = 1.71 ± 0.06. The clustering amplitude increases slowly with absolute magnitude for galaxies fainter than M � , but rises more strongly at higher luminosities. At low luminosities, our results agree with measurements from the SSRS2 by Benoist et al. However, we find a weaker dependence of clustering strength on luminosity at the highest luminosities. The cor- relation function amplitude increases by a factor of 4.0 between MbJ 5log10 h = 18 and 22.5, and the most luminous galaxies are 3.0 times more strongly clustered than Lgalaxies. The power-law slope of the correlation function shows remarkably little variation for samples spanning a factor of 20 in luminosity. Our measurements are in very good agreement with the predictions of the hierarchical galaxy formation models of Benson et al.

Magnetic field-tuned quantum criticality in the metallic ruthenate Sr3Ru2O7.

Abstract: The concept of quantum criticality is proving to be central to attempts to understand the physics of strongly correlated electrons. Here, we argue that observations on the itinerant metamagnet Sr3Ru2O7 represent good evidence for a new class of quantum critical point, arising when the critical end point terminating a line of first-order transitions is depressed toward zero temperature. This is of interest both in its own right and because of the convenience of having a quantum critical point for which the tuning parameter is the magnetic field. The relationship between the resultant critical fluctuations and novel behavior very near the critical field is discussed.

Charting cultural variation in chimpanzees

Abstract: Cultural variation among chimpanzee communities or unit-groups at nine long-term study sites was charted through a systematic, collaborative procedure in which the directors of the sites first agreed a candidate list of 65 behaviour patterns (here fully defined), then classified each pattern in relation to its local frequency of occurrence. Thirty-nine of the candidate behaviour patterns were discriminated as cultural variants, sufficiently frequent at one or more sites to be consistent with social transmission, yet absent at one or more others where environmental explanations were rejected. Each community exhibited a unique and substantial profile of such variants, far exceeding cultural variation reported before for any other non-human species. Evaluation of these pan-African distributions against three models for the diffusion of traditions identified multiple cases consistent with cultural evolution involving differentiation in form, function and targets of behaviour patterns.

Self-perceived attractiveness influences human female preferences for sexual dimorphism and symmetry in male faces

Abstract: Exaggerated sexual dimorphism and symmetry in human faces have both been linked to potential 'good-gene' benefits and have also been found to influence the attractiveness of male faces. The current study explores how female self-rated attractiveness influences male face preference in females using faces manipulated with computer graphics. The study demonstrates that there is a relatively increased preference for masculinity and an increased preference for symmetry for women who regard themselves as attractive. This finding may reflect a condition-dependent mating strategy analogous to behaviours found in other species. The absence of a preference for proposed markers of good genes may be adaptive in women of low mate value to avoid the costs of decreased parental investment from the owners of such characteristics.

Crystal structure of the multifunctional paramyxovirus hemagglutinin-neuraminidase.

Abstract: Paramyxoviruses are the main cause of respiratory disease in children. One of two viral surface glycoproteins, the hemagglutinin-neuraminidase (HN), has several functions in addition to being the major surface antigen that induces neutralizing antibodies. Here we present the crystal structures of Newcastle disease virus HN alone and in complex with either an inhibitor or with the β-anomer of sialic acid. The inhibitor complex reveals a typical neuraminidase active site within a β-propeller fold. Comparison of the structures of the two complexes reveal differences in the active site, suggesting that the catalytic site is activated by a conformational switch. This site may provide both sialic acid binding and hydrolysis functions since there is no evidence for a second sialic acid binding site in HN. Evidence for a single site with dual functions is examined and supported by mutagenesis studies. The structure provides the basis for the structure-based design of inhibitors for a range of paramyxovirus-induced diseases.

NK cells and NKT cells collaborate in host protection from methylcholanthrene-induced fibrosarcoma.

Abstract: NK1.1(+) V(alpha)14J(alpha)281(+) (NKT) cells can be induced by IL-12 therapy to mediate tumor rejection; however, methylcholanthrene (MCA)-induced fibrosarcoma is the only tumor model described where NKT cells play a natural role in controlling tumor initiation. From our previous study in C57BL/6 mice it remained unclear whether NK cells were also involved in this natural response. Herein, to discriminate the function of NK and NKT cells, we have evaluated fibrosarcoma development in mice deficient in NKT cells, but not NK cells, and mice deficient in NK cells, but not NKT cells. The results indicate that both NK cells and NKT cells are essential and collaborate in natural host immunity against MCA-induced sarcoma. In contrast, sarcoma incidence and growth rate were reduced using IL-12 therapy, this effect was mediated in the absence of T cells (including NKT cells), but not NK cells.

Symmetry, sexual dimorphism in facial proportions and male facial attractiveness.

Abstract: Facial symmetry has been proposed as a marker of developmental stability that may be important in human mate choice. Several studies have demonstrated positive relationships between facial symmetry and attractiveness. It was recently proposed that symmetry is not a primary cue to facial attractiveness, as symmetrical faces remain attractive even when presented as half faces (with no cues to symmetry). Facial sexual dimorphisms ('masculinity') have been suggested as a possible cue that may covary with symmetry in men following data on trait size/symmetry relationships in other species. Here, we use real and computer graphic male faces in order to demonstrate that (i) symmetric faces are more attractive, but not reliably more masculine than less symmetric faces and (ii) that symmetric faces possess characteristics that are attractive independent of symmetry, but that these characteristics remain at present undefined.

The Speed of Sight

Abstract: Macaque monkeys were presented with continuous rapid serial visual presentation (RSVP) sequences of unrelated naturalistic images at rates of 14–222 msec/image, while neurons that responded selectively to complex patterns (e.g., faces) were recorded in temporal cortex. Stimulus selectivity was preserved for 65p of these neurons even at surprisingly fast presentation rates (14 msec/image or 72 images/sec). Five human subjects were asked to detect or remember images under equivalent conditions. Their performance in both tasks was above chance at all rates (14–111 msec/image). The performance of single neurons was comparable to that of humans and responded in a similar way to changes in presentation rate. The implications for the role of temporal cortex cells in perception are discussed.

Synthesis and device characterisation of side-chain polymer electron transport materials for organic semiconductor applications

Abstract: Improved syntheses and polymerisations are reported of monomers bearing electron transporting substituents based on 2,5-diphenyloxadiazole and 2,3-diphenylquinoxaline attached directly to a vinyl group. By copolymerisation and by use of mixtures of homopolymers, these materials have been incorporated into light emitting polymer devices in which hole conduction properties are provided by 4-vinyltriphenylamine groups. High luminescence efficiency is achieved by use of a fluorescent additive. The resulting devices show narrow emission bands and high brightnesses, except in the case of those based on a diphenyloxadiazole–triphenylamine polymer blend. Thermal analysis data are equivocal but we present evidence that in this system, but not the quinoxaline blend, phase separation occurs. The minority charge carrying capacity of the homopolymers is probed: it is shown that the quinoxaline derivative has hole blocking properties superior to those of the oxadiazole polymer and is a good candidate for use in optimised devices.

Consistent patterns and the idiosyncratic effects of biodiversity in marine ecosystems.

Abstract: Revealing the consequences of species extinctions for ecosystem function has been a chief research goal and has been accompanied by enthusiastic debate. Studies carried out predominantly in terrestrial grassland and soil ecosystems have demonstrated that as the number of species in assembled communities increases, so too do certain ecosystem processes, such as productivity, whereas others such as decomposition can remain unaffected. Diversity can influence aspects of ecosystem function, but questions remain as to how generic the patterns observed are, and whether they are the product of diversity, as such, or of the functional roles and traits that characterize species in ecological systems. Here we demonstrate variable diversity effects for species representative of marine coastal systems at both global and regional scales. We provide evidence for an increase in complementary resource use as diversity increases and show strong evidence for diversity effects in naturally assembled communities at a regional scale. The variability among individual species responses is consistent with a positive but idiosyncratic pattern of ecosystem function with increased diversity.