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Array programming with NumPy

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TLDR
In this paper, the authors review how a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data, and their evolution into a flexible interoperability layer between increasingly specialized computational libraries is discussed.
Abstract
Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy is the primary array programming library for the Python language. It has an essential role in research analysis pipelines in fields as diverse as physics, chemistry, astronomy, geoscience, biology, psychology, materials science, engineering, finance and economics. For example, in astronomy, NumPy was an important part of the software stack used in the discovery of gravitational waves1 and in the first imaging of a black hole2. Here we review how a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data. NumPy is the foundation upon which the scientific Python ecosystem is constructed. It is so pervasive that several projects, targeting audiences with specialized needs, have developed their own NumPy-like interfaces and array objects. Owing to its central position in the ecosystem, NumPy increasingly acts as an interoperability layer between such array computation libraries and, together with its application programming interface (API), provides a flexible framework to support the next decade of scientific and industrial analysis. NumPy is the primary array programming library for Python; here its fundamental concepts are reviewed and its evolution into a flexible interoperability layer between increasingly specialized computational libraries is discussed.

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Effects of UV Stellar Spectral Uncertainty on the Chemistry of Terrestrial Atmospheres

TL;DR: In this paper , the authors use the MUSCLES catalog and UV line scaling relations to understand how well reconstructed host star spectra reproduce photochemically modeled atmospheres using real UV observations.
Journal ArticleDOI

The impact of mixing treatments on cloud modelling in 3D simulations of hot Jupiters

TL;DR: In this article, the role of mixing by replacing the default convective treatment used in previous works with a more physically relevant mixing treatment based on global circulation is investigated, and it is shown that uncertainty in the efficiency of sedimentation through the sedimentation factor plays a larger role in shaping cloud thickness and its radiative feedback on the local gas temperatures than the switch in mixing treatment.
Journal ArticleDOI

Correction to: Optical variability of quasars with 20-year photometric light curves

Zach Stone, +120 more
TL;DR: In this paper , the authors studied the optical variability of a sample of 190 quasars within the SDSS Stripe 82 region that have long-term photometric coverage during 1998-2020.
Journal ArticleDOI

Structural Analysis of Nanoscale Network Materials Using Graph Theory.

TL;DR: StructuralGT as mentioned in this paper automatically produces a graph theoretical (GT) description of percolating nanoscale networks from various micrographs that addresses the challenges of describing aperiodic architectures using traditional methods that are tailored for crystals.
Journal ArticleDOI

Label-free identification of microplastics in human cells: dark-field microscopy and deep learning study.

TL;DR: In this paper, a residual neural network (ResNet) was used to classify polystyrene microparticles using enhanced dark-field microscopy and residual neural networks (RNNs).
References
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Journal Article

Scikit-learn: Machine Learning in Python

TL;DR: Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems, focusing on bringing machine learning to non-specialists using a general-purpose high-level language.
Journal ArticleDOI

Matplotlib: A 2D Graphics Environment

TL;DR: Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.
Journal ArticleDOI

SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python

TL;DR: SciPy as discussed by the authors is an open source scientific computing library for the Python programming language, which includes functionality spanning clustering, Fourier transforms, integration, interpolation, file I/O, linear algebra, image processing, orthogonal distance regression, minimization algorithms, signal processing, sparse matrix handling, computational geometry, and statistics.
Proceedings ArticleDOI

TensorFlow: a system for large-scale machine learning

TL;DR: TensorFlow as mentioned in this paper is a machine learning system that operates at large scale and in heterogeneous environments, using dataflow graphs to represent computation, shared state, and the operations that mutate that state.
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