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Array programming with NumPy

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TLDR
In this paper, the authors review how a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data, and their evolution into a flexible interoperability layer between increasingly specialized computational libraries is discussed.
Abstract
Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy is the primary array programming library for the Python language. It has an essential role in research analysis pipelines in fields as diverse as physics, chemistry, astronomy, geoscience, biology, psychology, materials science, engineering, finance and economics. For example, in astronomy, NumPy was an important part of the software stack used in the discovery of gravitational waves1 and in the first imaging of a black hole2. Here we review how a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data. NumPy is the foundation upon which the scientific Python ecosystem is constructed. It is so pervasive that several projects, targeting audiences with specialized needs, have developed their own NumPy-like interfaces and array objects. Owing to its central position in the ecosystem, NumPy increasingly acts as an interoperability layer between such array computation libraries and, together with its application programming interface (API), provides a flexible framework to support the next decade of scientific and industrial analysis. NumPy is the primary array programming library for Python; here its fundamental concepts are reviewed and its evolution into a flexible interoperability layer between increasingly specialized computational libraries is discussed.

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Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus.

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A Quasi-periodic Oscillation in the γ-Ray Emission from the Non-blazar Active Galactic Nucleus PKS 0521-36

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EMDA: A Python package for Electron Microscopy Data Analysis

TL;DR: In this paper , an open-source Python library EMDA for map and model manipulation is presented with a specific focus on validation, and the use of several functionalities in the library is presented through several examples.
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The origin of metal-poor stars on prograde disc orbits in FIRE simulations of Milky Way-mass galaxies

TL;DR: Santistevan et al. as discussed by the authors investigated the prevalence and origin of prograde metal-poor stars in the Milky Way (MW) using the Feedback In Realistic Environments 2 (FIRE-2) suite of cosmological zoom-in simulations.
Journal ArticleDOI

Numerical metrics for complete intersection and Kreuzer–Skarke Calabi–Yau manifolds

TL;DR: This work introduces neural networks to compute numerical Ricci-flat Calabi–Yau (CY) metrics for complete intersection and Kreuzer–Skarke (KS) CY manifolds at any point in Kähler and complex structure moduli space, and introduces the package cymetric which provides computation realizations of these techniques.
References
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Journal Article

Scikit-learn: Machine Learning in Python

TL;DR: Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems, focusing on bringing machine learning to non-specialists using a general-purpose high-level language.
Journal ArticleDOI

Matplotlib: A 2D Graphics Environment

TL;DR: Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.
Journal ArticleDOI

SciPy 1.0--Fundamental Algorithms for Scientific Computing in Python

TL;DR: SciPy as discussed by the authors is an open source scientific computing library for the Python programming language, which includes functionality spanning clustering, Fourier transforms, integration, interpolation, file I/O, linear algebra, image processing, orthogonal distance regression, minimization algorithms, signal processing, sparse matrix handling, computational geometry, and statistics.
Proceedings ArticleDOI

TensorFlow: a system for large-scale machine learning

TL;DR: TensorFlow as mentioned in this paper is a machine learning system that operates at large scale and in heterogeneous environments, using dataflow graphs to represent computation, shared state, and the operations that mutate that state.
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