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Cofilin is a pH sensor for actin free barbed end formation: role of phosphoinositide binding.

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TLDR
A molecular mechanism whereby cofilin acts as a pH sensor to mediate a pH-dependent actin filament dynamics is suggested, which suggests that it has a more complex behavior in cells.
Abstract
Newly generated actin free barbed ends at the front of motile cells provide sites for actin filament assembly driving membrane protrusion. Growth factors induce a rapid biphasic increase in actin free barbed ends, and we found both phases absent in fibroblasts lacking H+ efflux by the Na-H exchanger NHE1. The first phase is restored by expression of mutant cofilin-H133A but not unphosphorylated cofilin-S3A. Constant pH molecular dynamics simulations and nuclear magnetic resonance (NMR) reveal pH-sensitive structural changes in the cofilin C-terminal filamentous actin binding site dependent on His133. However, cofilin-H133A retains pH-sensitive changes in NMR spectra and severing activity in vitro, which suggests that it has a more complex behavior in cells. Cofilin activity is inhibited by phosphoinositide binding, and we found that phosphoinositide binding is pH-dependent for wild-type cofilin, with decreased binding at a higher pH. In contrast, phosphoinositide binding by cofilin-H133A is attenuated and pH insensitive. These data suggest a molecular mechanism whereby cofilin acts as a pH sensor to mediate a pH-dependent actin filament dynamics.

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Dysregulated pH: a perfect storm for cancer progression.

TL;DR: The central role of pH sensors in cancer cell adaptations is highlighted and how dysregulated pH could be exploited to develop cancer-specific therapeutics is suggested.
Journal ArticleDOI

Random versus directionally persistent cell migration.

TL;DR: Factors such as the topography of the extracellular matrix, the cellular polarity machinery, receptor signalling, integrin trafficking, Integrin co-receptors and actomyosin contraction converge on regulation of the Rho family of GTPases and the control of lamellipodial protrusions to promote directional migration.
Journal ArticleDOI

ADF/Cofilin: A Functional Node in Cell Biology

TL;DR: It is argued that this ability to respond to physiological changes by modulating those same changes makes the ADF/cofilin protein family a homeostatic regulator or 'functional node' in cell biology.
Journal ArticleDOI

pH sensing and regulation in cancer.

TL;DR: Some of the major players in proton sensing at the plasma membrane and their downstream consequences in cancer cells are discussed and how these pH-mediated changes affect processes such as migration and metastasis are discussed.
References
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Journal ArticleDOI

Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids

TL;DR: In this article, the parametrization and testing of the OPLS all-atom force field for organic molecules and peptides are described, and the parameters for both torsional and non-bonded energy properties have been derived, while the bond stretching and angle bending parameters have been adopted mostly from the AMBER force field.
Journal ArticleDOI

The Amber biomolecular simulation programs

TL;DR: The development, current features, and some directions for future development of the Amber package of computer programs, which contains a group of programs embodying a number of powerful tools of modern computational chemistry, focused on molecular dynamics and free energy calculations of proteins, nucleic acids, and carbohydrates.
Journal ArticleDOI

Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

TL;DR: Glide approximates a complete systematic search of the conformational, orientational, and positional space of the docked ligand to find the best docked pose using a model energy function that combines empirical and force-field-based terms.
Journal ArticleDOI

Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening.

TL;DR: Comparisons to results for the thymidine kinase and estrogen receptors published by Rognan and co-workers show that Glide 2.5 performs better than GOLD 1.1, FlexX 1.8, or DOCK 4.01.
Journal ArticleDOI

Cellular Motility Driven by Assembly and Disassembly of Actin Filaments

TL;DR: A core set of proteins including actin, Arp2/3 complex, profilin, capping protein, and ADF/cofilin can reconstitute the process in vitro, and mathematical models of the constituent reactions predict the rate of motion.
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