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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Network cross-validation by edge sampling

TL;DR: In this article, the authors propose a new network resampling strategy based on splitting node pairs rather than nodes, which is applicable to cross-validation for a wide range of network model selection tasks.
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Evaluating Overfit and Underfit in Models of Network Community Structure

TL;DR: In this paper, a broad investigation of over and underfitting across 16 state-of-the-art community detection algorithms applied to a novel benchmark corpus of 572 structurally diverse real-world networks is presented.
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Identifying Evolving Groups in Dynamic Multimode Networks

TL;DR: This work shows that the algorithm can be interpreted as an iterative latent semantic analysis process, which allows for extensions to handle networks with actor attributes and within-mode interactions, and suggests its generality in capturing evolving groups in networks with heterogeneous entities and complex relationships.
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A Distributional Framework for Matched Employer Employee Data

TL;DR: In this article, a discrete heterogeneity framework for matched employer employee data is developed, which allows unrestricted interactions between worker and job movers and unrestricted sorting based on these unobservables.
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Community detection and graph partitioning

TL;DR: Two of the most widely used inference methods can be mapped directly onto versions of the standard minimum-cut graph partitioning problem, which allows us to apply any of the many well-understood partitioning algorithms to the solution of community detection problems.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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