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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Citations
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Journal ArticleDOI

Mixture models and networks: The stochastic blockmodel:

TL;DR: This work considers stochastic blockmodels and some of their variants and extensions from a mixture modelling perspective and focuses on the application of the models to several real-world network datasets, showcasing the advantages and pitfalls of different approaches.

A simple infinite topic mixture for rich graphs and relational data

TL;DR: A simple component or “topic” model for relational data, that is, for heterogeneous collections of co-occurrences between categorical variables, is proposed, especially suitable for finding global components from collections of massively heterogeneous data.
Dissertation

Statistical Inference Utilizing Agent Based Models

TL;DR: Statistical Inference Utilizing Agent Based Models helps improve the quality of inference in the decision-making process and speed up the development of new insights.
Journal ArticleDOI

On equivalence of likelihood maximization of stochastic block model and constrained nonnegative matrix factorization

TL;DR: In this article, the logarithm of likelihood function for stochastic block model can be reformulated under the framework of nonnegative matrix factorization, which is more effective than the multiplicative update rules for NMF.
Proceedings ArticleDOI

Bayesian probabilistic model for context-aware recommendations

TL;DR: A latent probabilistic model is proposed to incorporate the contextual information by adopting a binary particle-swarm optimization technique, and the relevant contextual factors for user classes and item classes are identified and incorporated into the model.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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