scispace - formally typeset
Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

read more

Content maybe subject to copyright    Report

Citations
More filters
Journal ArticleDOI

Asymptotic analysis of the stochastic block model for modular networks and its algorithmic applications.

TL;DR: This paper uses the cavity method of statistical physics to obtain an asymptotically exact analysis of the phase diagram of the stochastic block model, a commonly used generative model for social and biological networks, and develops a belief propagation algorithm for inferring functional groups or communities from the topology of the network.
Journal ArticleDOI

A nonparametric view of network models and Newman–Girvan and other modularities

TL;DR: An attempt at unifying points of view and analyses of these objects coming from the social sciences, statistics, probability and physics communities are presented and the approach to the Newman–Girvan modularity, widely used for “community” detection, is applied.
Proceedings ArticleDOI

Overlapping community detection at scale: a nonnegative matrix factorization approach

TL;DR: This paper presents BIGCLAM (Cluster Affiliation Model for Big Networks), an overlapping community detection method that scales to large networks of millions of nodes and edges and builds on a novel observation that overlaps between communities are densely connected.
Journal ArticleDOI

Statistical Models for Social Networks

TL;DR: This review first treats models for single (cross-sectionally observed) networks and then for network dynamics, and actor-oriented models here provide a model that can represent many dependencies in a flexible way.
Journal ArticleDOI

Variational Inference: A Review for Statisticians

TL;DR: Variational inference (VI), a method from machine learning that approximates probability densities through optimization, is reviewed and a variant that uses stochastic optimization to scale up to massive data is derived.
References
More filters
Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
Related Papers (5)