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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Citations
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Journal ArticleDOI

Variational Inference for Stochastic Block Models From Sampled Data

TL;DR: In this article, nonobserved dyads during the sampling of a network and consecutive issues in the inference of the stochastic block model (SBM) were dealt with, and sampling designs and recover missin...
Book ChapterDOI

Mixture of Experts Modelling with Social Science Applications

TL;DR: This is the author's version of Chapter 9 published in "Mixture: Estimation and Applications" (2011), edited by Christian Robert, Kerrie Mengersen, Mike Titterington.
Posted Content

Modeling heterogeneity in random graphs through latent space models: a selective review

TL;DR: A selective review on probabilistic modeling of heterogeneity in random graphs focuses on latent space models and more particularly on stochastic block models and their extensions that have undergone major developments in the last five years.
Journal ArticleDOI

Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model

TL;DR: A regularized sparse generative network model (RSGNM) is developed, by adding another process that generates propensities using exponential distribution and incorporating Laplacian regularizer into an existing generativenetwork model, for protein complexes identification.
Proceedings ArticleDOI

Predicting Item Adoption Using Social Correlation

TL;DR: The Social Correlation model based on Latent Dirichlet Allocation (LDA) that decomposes the adoption graph into a set of latent factors reflecting user preferences, and a social correlation matrix reflecting the degree of correlation from one user to another is proposed.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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