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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Proceedings ArticleDOI

Integrating meta-path selection with user-guided object clustering in heterogeneous information networks

TL;DR: This work proposes to integrate meta-path selection with user-guided clustering to cluster objects in networks, where a user first provides a small set of object seeds for each cluster as guidance, and an effective and efficient iterative algorithm, PathSelClus, is proposed to learn the model.
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A state-space mixed membership blockmodel for dynamic network tomography

TL;DR: In this article, the authors propose a model-based approach to analyze the dynamic tomography of such time-evolving networks, which allows actors to behave differently over time and carry out different roles/functions when interacting with different peers.
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Sparse graphs using exchangeable random measures

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Nonnegative Matrix Factorization for Signal and Data Analytics: Identifiability, Algorithms, and Applications

TL;DR: Nonnegative matrix factorization (NMF) aims to factor a data matrix into low-rank latent factor matrices with nonnegativity constraints with nonNegativity constraints.
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Community detection in large‐scale networks: a survey and empirical evaluation

TL;DR: This review evaluated eight state‐of‐the‐art and five traditional algorithms for overlapping and disjoint community detection on large‐scale real‐world networks with known ground‐truth communities and showed that these two types of metrics are not equivalent.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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