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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Citations
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Journal ArticleDOI

Overlapping communities reveal rich structure in large-scale brain networks during rest and task conditions.

TL;DR: Dense overlapping communities are suggested to be well suited to capture the flexible and task dependent mapping between brain regions and their functions.
Journal ArticleDOI

Improved Bayesian inference for the stochastic block model with application to large networks

TL;DR: In this paper, an efficient MCMC algorithm is presented to cluster the nodes of a network such that nodes with similar role in the network are clustered together, known as block-modeling or block-clustering.
Journal ArticleDOI

Human interaction discovery in smartphone proximity networks

TL;DR: Using smartphone Bluetooth as a proximity sensor to create social networks, a probabilistic approach to mine human interaction types in real life is presented and shows that the model can automatically discover a variety of social contexts.
Journal ArticleDOI

GLAD: Group Anomaly Detection in Social Media Analysis

TL;DR: This article takes a generative approach by proposing a hierarchical Bayes model: Group Latent Anomaly Detection (GLAD) model, which takes both pairwise and point-wise data as input, automatically infers the groups and detects group anomalies simultaneously.
Posted Content

Universally Consistent Latent Position Estimation and Vertex Classification for Random Dot Product Graphs

TL;DR: In this article, the eigendecomposition of the adjacency matrix is used to estimate latent positions for random dot product graphs, provided the latent positions are i.i.d. from some distribution.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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