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Open AccessJournal ArticleDOI

Mixed Membership Stochastic Blockmodels

TLDR
In this article, the authors introduce a class of variance allocation models for pairwise measurements, called mixed membership stochastic blockmodels, which combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters (mixed membership), and develop a general variational inference algorithm for fast approximate posterior inference.
Abstract
Consider data consisting of pairwise measurements, such as presence or absence of links between pairs of objects. These data arise, for instance, in the analysis of protein interactions and gene regulatory networks, collections of author-recipient email, and social networks. Analyzing pairwise measurements with probabilistic models requires special assumptions, since the usual independence or exchangeability assumptions no longer hold. Here we introduce a class of variance allocation models for pairwise measurements: mixed membership stochastic blockmodels. These models combine global parameters that instantiate dense patches of connectivity (blockmodel) with local parameters that instantiate node-specific variability in the connections (mixed membership). We develop a general variational inference algorithm for fast approximate posterior inference. We demonstrate the advantages of mixed membership stochastic blockmodels with applications to social networks and protein interaction networks.

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Journal ArticleDOI

TWILITE: A recommendation system for Twitter using a probabilistic model based on latent Dirichlet allocation

TL;DR: This paper proposes TWILITE, a recommendation system for Twitter using probabilistic modeling based on latent Dirichlet allocation which recommends top-K users to follow andTop-K tweets to read for a user and develops an inference algorithm based on the variational EM algorithm for learning model parameters.
Journal ArticleDOI

Transforming graph data for statistical relational learning

TL;DR: An intuitive taxonomy for data representation transformations in relational domains that incorporates link transformation and node transformation as symmetric representation tasks is introduced and motivated through detailed examples.
Reference EntryDOI

Econometrics of Network Formation

TL;DR: A growing empirical literature examines the role that networks play in a variety of economic phenomena, including social learning, labor market search, peer effects in education, and economic incentives underlying the interaction as mentioned in this paper.
Posted Content

Recovering communities in the general stochastic block model without knowing the parameters

TL;DR: These provide the first algorithms affording efficiency, universality and information-theoretic optimality for strong and weak consistency in the general SBM with linear size communities.
Proceedings Article

A Consistent Histogram Estimator for Exchangeable Graph Models

TL;DR: A histogram estimator of a graphon that is provably consistent and numerically efficient is proposed, based on a sorting-and-smoothing (SAS) algorithm, which first sorts the empirical degree of agraph, then smooths the sorted graph using total variation minimization.
References
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Journal ArticleDOI

Gene Ontology: tool for the unification of biology

TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Journal ArticleDOI

Latent dirichlet allocation

TL;DR: This work proposes a generative model for text and other collections of discrete data that generalizes or improves on several previous models including naive Bayes/unigram, mixture of unigrams, and Hofmann's aspect model.
Journal ArticleDOI

Finding scientific topics

TL;DR: A generative model for documents is described, introduced by Blei, Ng, and Jordan, and a Markov chain Monte Carlo algorithm is presented for inference in this model, which is used to analyze abstracts from PNAS by using Bayesian model selection to establish the number of topics.
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