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Open AccessJournal ArticleDOI

Reversible Control of Protein Localization in Living Cells Using a Photocaged-Photocleavable Chemical Dimerizer

TLDR
This work presents a novel chemical inducer of protein dimerization that can be rapidly turned on and off using single pulses of light at two orthogonal wavelengths and demonstrates the utility of this molecule by controlling peroxisome transport and mitotic checkpoint signaling in living cells.
Abstract
Many dynamic biological processes are regulated by protein–protein interactions and protein localization. Experimental techniques to probe such processes with temporal and spatial precision include photoactivatable proteins and chemically induced dimerization (CID) of proteins. CID has been used to study several cellular events, especially cell signaling networks, which are often reversible. However, chemical dimerizers that can be both rapidly activated and deactivated with high spatiotemporal resolution are currently limited. Herein, we present a novel chemical inducer of protein dimerization that can be rapidly turned on and off using single pulses of light at two orthogonal wavelengths. We demonstrate the utility of this molecule by controlling peroxisome transport and mitotic checkpoint signaling in living cells. Our system highlights and enhances the spatiotemporal control offered by CID. This tool addresses biological questions on subcellular levels by controlling protein–protein interactions.

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The liquid nucleome - phase transitions in the nucleus at a glance.

TL;DR: How membrane-less compartments in the nucleus are formed by phase separation and help to organize and regulate nuclear functions is discussed.
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Light-Driven Expansion of Spiropyran Hydrogels.

TL;DR: A sulfonate-based water-soluble photoswitch that triggers a volumetric expansion in hydrogels upon exposure to photons is reported on, which led to materials with the negative phototaxis observed in plants and could expand the potential use ofhydrogels as sensors, soft robots, and actuators.
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Simulation methods for liquid-liquid phase separation of disordered proteins.

TL;DR: An overview of computational studies focused on phase separating biomolecules and the tools that are available to researchers interested in this topic is provided.
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Clip Chemistry: Diverse (Bio)(macro)molecular and Material Function through Breaking Covalent Bonds.

TL;DR: In the two decades since the introduction of the click chemistry concept, the toolbox of "click reactions" has continually expanded, enabling chemists, materials scientists, and biologists to rapidly and selectively build complexity for their applications of interest as discussed by the authors.
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Aptamer-based optical manipulation of protein subcellular localization in cells.

TL;DR: A near-infrared light-responsive aptamer-based system to regulate the nuclear-cytoplasmic shuttling of NF-κB subunit RelA, enabling regulation of RelA-related signaling pathways and development of label-free protein photoregulation strategies for studying complex biological events.
References
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Journal ArticleDOI

Photoremovable Protecting Groups in Chemistry and Biology: Reaction Mechanisms and Efficacy

TL;DR: The review covers the knowledge on photoremovable protecting groups and includes all relevant chromophores studied in the time period of 2000–2012 and the most relevant earlier works are discussed.
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Functions and dysfunctions of mitochondrial dynamics.

TL;DR: The molecular mechanisms that control mitochondrial dynamics, and why are they important for mitochondrial function are reviewed and how defects in mitochondrial dynamics might cause neuronal disease is explored.
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Mitochondrial form and function

TL;DR: Recent advances have revealed how the organelle's behaviour has evolved to allow the accurate transmission of its genome and to become responsive to the needs of the cell and its own dysfunction.
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Peroxisomes take shape

TL;DR: Ongoing studies are deciphering the diverse molecular mechanisms that underlie biogenesis and how they cooperate to dynamically control peroxisome utility to lead to an understanding of peroxISome dynamics that can be capitalized upon for bioengineering and the development of therapies to improve human health.
Journal ArticleDOI

Optochemical Control of Biological Processes in Cells and Animals.

TL;DR: Recent developments of optochemical tools, including small molecules, peptides, proteins, and nucleic acids that can be irreversibly or reversibly controlled through light irradiation, are discussed, with a focus on applications in cells and animals.
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