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Spontaneous doping of the basal plane of MoS2 single layers through oxygen substitution under ambient conditions.

TLDR
In this paper, single-atom-level structural investigations reveal that oxygen atoms spontaneously incorporate into the basal plane of MoS2 single layers during ambient exposure, leading to solid-solution-type 2D MoS 2-xOx crystals.
Abstract
The chemical inertness of the defect-free basal plane confers environmental stability to MoS2 single layers, but it also limits their chemical versatility and catalytic activity The stability of pristine MoS2 basal plane against oxidation under ambient conditions is a widely accepted assumption however, here we report single-atom-level structural investigations that reveal that oxygen atoms spontaneously incorporate into the basal plane of MoS2 single layers during ambient exposure The use of scanning tunnelling microscopy reveals a slow oxygen-substitution reaction, during which individual sulfur atoms are replaced one by one by oxygen, giving rise to solid-solution-type 2D MoS2-xOx crystals Oxygen substitution sites present all over the basal plane act as single-atom reaction centres, substantially increasing the catalytic activity of the entire MoS2 basal plane for the electrochemical H2 evolution reaction

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1
Spontaneous doping of 2D MoS
2
basal plane by oxygen substitution during
ambient exposure
János Pető
1
, Tamás Ollár
2
,
Péter Vancsó
1,3
, Zakhar I. Popov
4
, Gábor Zsolt Magda
1
, Gergely
Dobrik
1
, Chanyong Hwang
5
, Pavel B. Sorokin
4
, and Levente Tapasztó
1*
1. Hungarian Academy of Sciences, Centre for Energy Research, Institute of Technical
Physics and Materials Science, 2DNanoelectronics Lendület Research Group 1121
Budapest, Hungary
2. Hungarian Academy of Sciences, Centre for Energy Research, Institute for Energy
Security and Environmental Safety, Surface Chemistry and Catalysis Department 1121
Budapest, Hungary
3. University of Namur, Department of Physics, 61 rue de Bruxelles, 5000 Namur, Belgium
4. National University of Science and Technology MISiS, 119049 Moscow, Russia
5. Korea Research Institute for Standards and Science, Daejeon 305340, South Korea
* tapaszto@mfa.kfki.hu
The chemistry of atomically thin crystals can markedly differ from the
conventional surface reactions of their bulk counterparts. Here we provide atomic level
insights into the ambient oxidation reaction of MoS
2
monolayers by scanning tunneling
microscopy measurements. In contrast to the generally accepted view of
environmentally inert basal plane, we found that oxygen atoms spontaneously
incorporate into the basal plane of MoS
2
single layers during ambient exposure. While
the basal plane was found to be stable against commonly investigated O chemisorption
and MoO
3
conversion, an oxygen substitution reaction has been revealed, upon which
individual sulfur atoms are one by one replaced by oxygen, giving rise to a novel 2D
solid solution type MoS
2-x
O
x
crystal. This oxidation process enables the chemical
modification of single atomic sites of 2D crystals opening new routes towards their
efficient defect engineering. An eloquent example is that the O substitution sites present
all over the basal plane substantially increase the catalytic activity of the 2D MoS
2
crystals for electrochemical H
2
evolution reaction.

2
Layered materials display thickness-dependent properties when approaching the single
layer limit. Chemistry is no exception, as evidenced by the oxidation and hydrogenation of
graphene
1
,
2
. Surface chemistry is a particularly promising approach for engineering the
properties of 2D materials, given their fully exposed atomic structure. However, the chemistry
of 2D Transition Metal Dichalcogenide (TMDC) crystals is mainly defined by their edges
3
,
where coordinatively unsaturated sites prevail. Not coincidentally, these reactive edge sites
were also found to be responsible for the catalytic activity of MoS
2
4
,
5
, one of the most widely
studied TMDC materials. However, the chemical modification restricted to edges is only
efficient in nanoscale islands
6
, as the edge to surface ratio drastically decreases in the 2D
limit. Consequently, for 2D crystals it is of particular importance to chemically and
catalytically activate their entire basal plane. Oxidation has widely been studied for graphene
as a promising approach towards its efficient exfoliation
7
. For 2D TMDC crystals the
oxidation reaction is also of particular importance, as for some crystals it can spontaneously
proceed under ambient conditions. Therefore, its study is essential for understanding their
long-term environmental stability, as well as it can open new routes towards chemically
engineering their properties.
While some TMDC crystals, such as HfSe
2
, MoTe
2
or WTe
2
, are known to be air-
sensitive
8
,
9
,
10
as they rapidly degrade under ambient, the most widely investigated members of
the TMDC family (MoS
2
, MoSe
2
, WS
2
, WSe
2
) have generally been considered air-stable
11
,
12
,
based also on decades-long experience with their bulk crystals. Nevertheless, it has been
demonstrated that in single layer form the oxidation of MoS
2
and WS
2
also occurs under
ambient conditions
13
. The detailed investigations revealed that the oxidation induced etching
originates from edges and grain boundaries and proceeds towards the interior of the flakes.
Due to the higher strength of the Mo-O bonds, as compared to Mo-S, the substitutional
oxidation of the 2D MoS
2
basal plane is in principle also thermodynamically favorable
14
,
15
.

3
However, while at under-coordinated atomic sites on edges and grain boundaries, such
oxidation is a fast, low-barrier process
14,15
, the oxidation of the defect-free basal plane has
been predicted to face relatively high kinetic barriers of about 1.6 eV
,
16
, rendering the basal
plane environmentally stable. Although experiments often reveal significantly lower
activation energy values for the MoS
2
oxidation, such as 0.54 eV or 0.98 eV
17
,
18
, no direct
evidence on the ambient oxidation of the pristine MoS
2
basal plane has been reported so far.
We propose that this is mainly due to the inability of the employed structural characterization
methods to resolve single-atom level structural changes. Harsh oxidation processes, such as
oxygen plasma treatment, UV-ozone exposure, electrochemical exfoliation, or high
temperature (> 300°C) annealing are able to oxidize the basal plane of MoS
2
crystals. Based
primarily on XPS investigations it was shown that such processes can lead either to covalent
oxygen bonding to the top sulfur atoms
14,
19
, or the formation of completely oxidized MoO
3
areas
20
,
21
,
22
that can subsequently volatilize, leading to etching. However, neither process is
ideal for chemically tuning the properties of MoS
2
sheets. While the formation of MoO
3
destroys the original MoS
2
crystal lattice, yielding an overall disordered and fragmented
structure, the chemisorption of oxygen onto chalcogen atoms is predicted to have a relatively
weak influence on band structure
and properties
14,16
. It has also been shown that oxidation can
both enhance and degrade the catalytic activity of MoS
2
, depending on the structural
details
23
,
24
, further emphasizing the importance of investigating and controlling the resulting
oxidized structure. The possibility of a substitutional oxidation reaction of MoS
2
has also been
raised as being thermodynamically preferred to oxygen chemisorption
15,
25
; however, no clear
experimental evidence has been reported so far. The controlled substitutional oxidation of the
MoS
2
basal plane would be a highly desirable reaction that preserves the original MoS
2
crystal structure, while in contrast to O chemisorption, it is also expected to substantially

4
influence the electronic band structure, enabling a more efficient engineering of its
electronic
14,16
and optical
26
properties.
Here we show that the basal plane of the MoS
2
monolayers subjected to long-term
ambient exposure spontaneously undergo such oxygen substitution reactions giving rise to a
novel, highly crystalline two-dimensional molybdenum oxy-sulfide phase.
Results and discussion
Ambient oxidation of the basal plane revealed at single-atom level
We have prepared mechanically exfoliated MoS
2
single layers on atomically flat Au
(111) substrates using a slightly modified version of a recently developed exfoliation
technique
27
yielding single layers with lateral dimension of hundreds of microns (see SI
section I. for details). Such large area samples are characterized by an extremely low edge to
surface ratio, grain boundary concentration, as well as a much smaller concentration and
variety of intrinsic point defects
28
, establishing them as an excellent model system for
studying the intrinsic chemical properties of the pristine basal plane. The exfoliated MoS
2
samples have been stored under ambient conditions (air, room temperature and ambient light)
for periods of up to 1.5 years. We have employed STM measurements to follow the atomic
level structural changes in the basal plane structure of 2D MoS
2
crystals during long-term
ambient exposure. So far mainly optical, scanning electron and atomic force microscopy
measurements have been employed to monitor the structural changes induced by oxidation in
MoS
2
layers. However, the spatial resolution of these methods does not allow detecting single
atom level modifications. Imaging the atomic-scale structure of the MoS
2
basal plane is
possible by high resolution scanning Transmission Electron Microscopy (TEM). However,
detecting light atoms such as oxygen with TEM is challenging due to their low contrast and
easy knock-out
29
,
30
. By contrast, STM measurements can detect the unaltered structure of
such oxygen defects due to its atomic resolution capability and the low energy of the

5
tunneling electrons
31
. Due to the slow oxidation reaction, and the noninvasive nature of the
measurements, the structure and number of oxidation induced defect sites did not change
during the STM imaging, enabling us to acquire atomic resolution snapshots of the oxidation
process.
Atomic resolution STM images of the basal plane of a mechanically exfoliated MoS
2
single layer after 1 month and 1 year of ambient exposure are shown in Fig. 1b and 1c,
respectively. The STM images have been acquired on the same sample, but at different
locations. In contrast to general expectations, STM measurements reveal clear modifications
in the atomic structure of the MoS
2
basal plane during ambient exposure. Freshly prepared 2D
MoS
2
crystals contain a native point defect density in the range of 10
11
-
10
12
cm
-2
(Fig. S2).
After a month of ambient exposure our STM measurements revealed the formation of new
point defects all over the basal plane increasing their concentration into the 10
12
-
10
13
cm
-2
range (Fig. 1b). The increase of the atomic scale defect concentration (up to
10
13
- 10
14
cm
-2
) appears more strikingly after a year exposure (Fig. 1c), when a substantial
area of the sample surface is already covered by such defects, clearly evidencing the ability of
the ambient exposure to create new defect sites in the basal plane structure of 2D MoS
2
crystals. Although the defect density shows some spatial variation, as evidenced by the
concentration ranges provided above, the effect of the ambient exposure time is more
significant. Higher resolution STM images (Fig. 1d) shed light on the atomic structure of the
defects induced by ambient exposure. Dark triangles in the STM images of 2D MoS
2
crystals
are characteristic to sulfur atom vacancies
31
. Within the dark triangles, bright spots can be
clearly detected that have not been observed before. These central bright spots are a
pronounced feature of the experimental STM images, as their contrast is even stronger than
that of S atoms of the MoS
2
lattice. The most straightforward choice is to attribute the bright
spots inside the S vacancies to atoms or molecules saturating the vacancies under ambient

Figures
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Related Papers (5)
Frequently Asked Questions (17)
Q1. What is the likely cause of the oxy-sulfide phase to be stabilize?

The slow reaction speed is most likely responsible for stabilizing the oxy-sulfide phase against the otherwise favorable full conversion to MoO3 20. 

So far mainly optical, scanning electron and atomic force microscopy measurements have been employed to monitor the structural changes induced by oxidation in MoS2 layers. 

Large area flakes could be easily identified under an optical microscope enabling the guided landing of the STM tip on MoS2 single layers. 

The locally increased electron affinity combined with the experimentally measured overall n-doping of the MoS2 crystals (Fig S15) can give rise to localized negative charges on the O substitution sites. 

while at under-coordinated atomic sites on edges and grain boundaries, such oxidation is a fast, low-barrier process14,15, the oxidation of the defect-free basal plane has been predicted to face relatively high kinetic barriers of about 1.6 eV,16, rendering the basal plane environmentally stable. 

A widely used parameter for predicting the catalytic activity of various sites is thehydrogen adsorption Gibbs free energy (ΔGH). 

The oxidation speed of the MoS2 basal plane under ambient was found to be of order of 1 atom / minute / μm 2. This ultra-slow oxidation reaction in principle enables an extremely precise control of oxygen concentration in the MoS2 lattice. 

Imaging the atomic-scale structure of the MoS2 basal plane is possible by high resolution scanning Transmission Electron Microscopy (TEM). 

The accelerated oxygen substitution process at higher temperatures also provides a more feasible route for the synthesis of oxy-sulfide crystals. 

Catalytic activity of 2D MoS2-xOx crystals towards hydrogen evolutionTo investigate how the oxygen substitution sites change the properties of MoS2 singlelayers, the authors have investigated the catalytic activity of 2D MoS2-xOx crystals for the electrochemical hydrogen evolution reaction (HER) (see Methods for experimental details). 

so far the structure of the synthesized molybdenum oxy-sulfide films was found to be amorphous or highly disordered with poor long-range crystalline order40,41. 

Here the authors show that the basal plane of the MoS2 monolayers subjected to long-termambient exposure spontaneously undergo such oxygen substitution reactions giving rise to a novel, highly crystalline two-dimensional molybdenum oxy-sulfide phase. 

Their theoretical results reveal that the best agreement with the experimental STM data is provided by single oxygen atoms substituting individual S atoms (saturating the S vacancy) displaying a dark triangle with a bright spot inside. 

The results displayed in Fig 3c show that in the case of MoS2 the typical kinetic barrier height is about 1 eV for the proposed reaction pathway. 

Ambient oxidation of the basal plane revealed at single-atom levelThe authors have prepared mechanically exfoliated MoS2 single layers on atomically flat Au(111) substrates using a slightly modified version of a recently developed exfoliation technique27 yielding single layers with lateral dimension of hundreds of microns (see SI section I. for details). 

To evaluate this effect for the O substitution sites of 2D MoS2 crystals, the authors have performed the Bader charge analysis (see SI section XII for details) that has proven useful for understanding the catalytic activity of sites where charge transfer plays an important role47. 

The effect of such charged dopants is not included in the ΔGH calculations, as it is challenging to treat charged impurities at the DFT level48.