Showing papers on "Species richness published in 2006"

The diversity and biogeography of soil bacterial communities

Abstract: For centuries, biologists have studied patterns of plant and animal diversity at continental scales. Until recently, similar studies were impossible for microorganisms, arguably the most diverse and abundant group of organisms on Earth. Here, we present a continental-scale description of soil bacterial communities and the environmental factors influencing their biodiversity. We collected 98 soil samples from across North and South America and used a ribosomal DNA-fingerprinting method to compare bacterial community composition and diversity quantitatively across sites. Bacterial diversity was unrelated to site temperature, latitude, and other variables that typically predict plant and animal diversity, and community composition was largely independent of geographic distance. The diversity and richness of soil bacterial communities differed by ecosystem type, and these differences could largely be explained by soil pH (r(2) = 0.70 and r(2) = 0.58, respectively; P < 0.0001 in both cases). Bacterial diversity was highest in neutral soils and lower in acidic soils, with soils from the Peruvian Amazon the most acidic and least diverse in our study. Our results suggest that microbial biogeography is controlled primarily by edaphic variables and differs fundamentally from the biogeography of "macro" organisms.

Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands

Abstract: Despite widespread concern about declines in pollination services, little is known about the patterns of change in most pollinator assemblages. By studying bee and hoverfly assemblages in Britain and the Netherlands, we found evidence of declines (pre-versus post-1980) in local bee diversity in both countries; however, divergent trends were observed in hoverflies. Depending on the assemblage and location, pollinator declines were most frequent in habitat and flower specialists, in univoltine species, and/or in nonmigrants. In conjunction with this evidence, outcrossing plant species that are reliant on the declining pollinators have themselves declined relative to other plant species. Taken together, these findings strongly suggest a causal connection between local extinctions of functionally linked plant and pollinator species.

Effects of biodiversity on the functioning of trophic groups and ecosystems

Abstract: Over the past decade, accelerating rates of species extinction have prompted an increasing number of studies to reduce species diversityexperimentallyandexaminehowthisalterstheefficiency by which communities capture resources and convert those into biomass 1,2 . So far, the generality of patterns and processes observed in individual studies have been the subjects of considerable debate 3–7 .Here wepresent aformal meta-analysis of studies thathaveexperimentallymanipulatedspeciesdiversitytoexamine how it affects the functioning of numerous trophic groups in multiple types of ecosystem. We show that the average effect of decreasing species richness is to decrease the abundance or biomass of the focal trophic group, leading to less complete depletion of resources used by that group. At the same time, analyses reveal that the standing stock of, and resource depletion by, the most species-rich polyculture tends to be no different from that of the single most productive species used in an experiment. Of the known mechanisms that might explain these trends, results are most consistent with what is called the ‘sampling effect’, which occurs when diverse communities are more likely to contain and become dominated by the most productive species. Whether this mechanism is widespread in natural communities is currently controversial. Patterns we report are remarkably consistent for four different trophic groups (producers, herbivores, detritivores and predators) and two major ecosystem types (aquatic and terrestrial). Collectively, ouranalysessuggestthat theaverage species loss does indeed affect the functioning of a wide variety of organisms and ecosystems, but the magnitude of these effects is ultimatelydeterminedbytheidentityofspeciesthataregoingextinct.

Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community

Abstract: Pathogens rarely cause extinctions of host species, and there are few examples of a pathogen changing species richness and diversity of an ecological community by causing local extinctions across a wide range of species. We report the link between the rapid appearance of a pathogenic chytrid fungus Batrachochytrium dendrobatidis in an amphibian community at El Cope, Panama, and subsequent mass mortality and loss of amphibian biodiversity across eight families of frogs and salamanders. We describe an outbreak of chytridiomycosis in Panama and argue that this infectious disease has played an important role in amphibian population declines. The high virulence and large number of potential hosts of this emerging infectious disease threaten global amphibian diversity.

The marine viromes of four oceanic regions

Abstract: Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.

The impact of insecticides and herbicides on the biodiversity and productivity of aquatic communities

Abstract: Pesticides constitute a major anthropogenic addition to natural communities. In aquatic communities, a great majority of pesticide impacts are determined from single- species experiments conducted under laboratory conditions. Although this is an essential protocol to rapidly identify the direct impacts of pesticides on organisms, it prevents an assessment of direct and indirect pesticide effects on organisms embedded in their natural ecological contexts. In this study, I examined the impact of four globally common pesticides (two insecticides, carbaryl (Sevin) and malathion; two herbicides, glyphosate (Roundup) and 2,4-D) on the biodiversity of aquatic communities containing algae and 25 species of animals. Species richness was reduced by 15% with Sevin, 30% with malathion, and 22% with Roundup, whereas 2,4-D had no effect. Both insecticides reduced zooplankton diversity by eliminating cladocerans but not copepods (the latter increased in abundance). The in- secticides also reduced the diversity and biomass of predatory insects and had an apparent indirect positive effect on several species of tadpoles, but had no effect on snails. The two herbicides had no effects on zooplankton, insect predators, or snails. Moreover, the herbicide 2,4-D had no effect on tadpoles. However, Roundup completely eliminated two species of tadpoles and nearly exterminated a third species, resulting in a 70% decline in the species richness of tadpoles. This study represents one of the most extensive experimental inves- tigations of pesticide effects on aquatic communities and offers a comprehensive perspective on the impacts of pesticides when nontarget organisms are examined under ecologically relevant conditions.

Plant genotypic diversity predicts community structure and governs an ecosystem process.

Abstract: Theory predicts, and recent empirical studies have shown, that the diversity of plant species determines the diversity of associated herbivores and mediates ecosystem processes, such as aboveground net primary productivity (ANPP). However, an often-overlooked component of plant diversity, namely population genotypic diversity, may also have wide-ranging effects on community structure and ecosystem processes. We showed experimentally that increasing population genotypic diversity in a dominant old-field plant species, Solidago altissima, determined arthropod diversity and community structure and increased ANPP. The effects of genotypic diversity on arthropod diversity and ANPP were comparable to the effects of plant species diversity measured in other studies.

Spatial modelling of biodiversity at the community level

Abstract: Summary 1Statistical modelling is often used to relate sparse biological survey data to remotely derived environmental predictors, thereby providing a basis for predictively mapping biodiversity across an entire region of interest. The most popular strategy for such modelling has been to model distributions of individual species one at a time. Spatial modelling of biodiversity at the community level may, however, confer significant benefits for applications involving very large numbers of species, particularly if many of these species are recorded infrequently. 2Community-level modelling combines data from multiple species and produces information on spatial pattern in the distribution of biodiversity at a collective community level instead of, or in addition to, the level of individual species. Spatial outputs from community-level modelling include predictive mapping of community types (groups of locations with similar species composition), species groups (groups of species with similar distributions), axes or gradients of compositional variation, levels of compositional dissimilarity between pairs of locations, and various macro-ecological properties (e.g. species richness). 3Three broad modelling strategies can be used to generate these outputs: (i) ‘assemble first, predict later’, in which biological survey data are first classified, ordinated or aggregated to produce community-level entities or attributes that are then modelled in relation to environmental predictors; (ii) ‘predict first, assemble later’, in which individual species are modelled one at a time as a function of environmental variables, to produce a stack of species distribution maps that is then subjected to classification, ordination or aggregation; and (iii) ‘assemble and predict together’, in which all species are modelled simultaneously, within a single integrated modelling process. These strategies each have particular strengths and weaknesses, depending on the intended purpose of modelling and the type, quality and quantity of data involved. 4Synthesis and applications. The potential benefits of modelling large multispecies data sets using community-level, as opposed to species-level, approaches include faster processing, increased power to detect shared patterns of environmental response across rarely recorded species, and enhanced capacity to synthesize complex data into a form more readily interpretable by scientists and decision-makers. Community-level modelling therefore deserves to be considered more often, and more widely, as a potential alternative or supplement to modelling individual species.

On defining and quantifying biotic homogenization

Abstract: Ongoing species invasions and extinctions are changing biological diversity in different ways at different spatial scales. Biotic homogenization (or BH) refers to the process by which the genetic, taxonomic or functional similarities of regional biotas increase over time. It is a multifaceted process that encompasses species invasions, extinctions and environmental alterations, focusing on how the identities of species (or their genetic or functional attributes) change over space and time. Despite the increasing use of the term BH in conservation biology, it is often used erroneously as a synonym for patterns of species invasions, loss of native species or changes in species richness through time. This reflects the absence of an agreed-upon, cogent definition of BH. Here, we offer an operational definition for BH and review the various methodologies used to study this process. We identify the strengths and weaknesses of these approaches, and make explicit recommendations for future studies. We conclude by citing the need for researchers to: (1) consider carefully the definition of BH by recognizing the genetic, taxonomic and functional realms of this process; (2) recognize that documenting taxonomic homogenization requires tracking the identity of species (not species richness) comprising biotas through space and time; and (3) employ more rigorous methods for quantifying BH.

DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae)

Abstract: Insect parasitoids are a major component of global biodiversity and affect the population dynamics of their hosts. However, identification of insect parasitoids is often difficult, and they are suspected to contain many cryptic species. Here, we ask whether the cytochrome c oxidase I DNA barcode could function as a tool for species identification and discovery for the 20 morphospecies of Belvosia parasitoid flies (Diptera: Tachinidae) that have been reared from caterpillars (Lepidoptera) in Area de Conservacion Guanacaste (ACG), northwestern Costa Rica. Barcoding not only discriminates among all 17 highly host-specific morphospecies of ACG Belvosia, but it also raises the species count to 32 by revealing that each of the three generalist species are actually arrays of highly host-specific cryptic species. We also identified likely hybridization among Belvosia by using a variable internal transcribed spacer region 1 nuclear rDNA sequence as a genetic covariate in addition to the strategy of overlaying barcode clusters with ecological information. If general, these results will increase estimates of global species richness and imply that tropical conservation and host–parasite interactions may be more complex than expected.

Do biotic interactions shape both sides of the humped-back model of species richness in plant communities?

Abstract: A humped-back relationship between species richness and community biomass has frequently been observed in plant communities, at both local and regional scales, although often improperly called a productivity-diversity relationship. Explanations for this relationship have emphasized the role of competitive exclusion, probably because at the time when the relationship was first examined, competition was considered to be the significant biotic filter structuring plant communities. However, over the last 15 years there has been a renewed interest in facilitation and this research has shown a clear link between the role of facilitation in structuring communities and both community biomass and the severity of the environment. Although facilitation may enlarge the realized niche of species and increase community richness in stressful environments, there has only been one previous attempt to revisit the humped-back model of species richness and to include facilitative processes. However, to date, no model has explored whether biotic interactions can potentially shape both sides of the humped-back model for species richness commonly detected in plant communities. Here, we propose a revision of Grime's original model that incorporates a new understanding of the role of facilitative interactions in plant communities. In this revised model, facilitation promotes diversity at medium to high environmental severity levels, by expanding the realized niche of stress-intolerant competitive species into harsh physical conditions. However, when environmental conditions become extremely severe the positive effects of the benefactors wane (as supported by recent research on facilitative interactions in extremely severe environments) and diversity is reduced. Conversely, with decreasing stress along the biomass gradient, facilitation decreases because stress-intolerant species become able to exist away from the canopy of the stress-tolerant species (as proposed by facilitation theory). At the same time competition increases for stress-tolerant species, reducing diversity in the most benign conditions (as proposed by models of competition theory). In this way our inclusion of facilitation into the classic model of plant species diversity and community biomass generates a more powerful and richer predictive framework for understanding the role of plant interactions in changing diversity. We then use our revised model to explain both the observed discrepancies between natural patterns of species richness and community biomass and the results of experimental studies of the impact of biodiversity on the productivity of herbaceous communities. It is clear that explicit consideration of concurrent changes in stress-tolerant and competitive species enhances our capacity to explain and interpret patterns in plant community diversity with respect to environmental severity.

Allometric scaling enhances stability in complex food webs

Abstract: Classic local stability theory predicts that complex ecological networks are unstable and are unlikely to persist despite empiricists' abundant documentation of such complexity in nature. This contradiction has puzzled biologists for decades. While some have explored how stability may be achieved in small modules of a few interacting species, rigorous demonstrations of how large complex and ecologically realistic networks dynamically persist remain scarce and inadequately understood. Here, we help fill this void by combining structural models of complex food webs with nonlinear bioenergetic models of population dynamics parameterized by biological rates that are allometrically scaled to populations' average body masses. Increasing predator-prey body mass ratios increase population persistence up to a saturation level that is reached by invertebrate and ectotherm vertebrate predators when being 10 or 100 times larger than their prey respectively. These values are corroborated by empirical predator-prey body mass ratios from a global data base. Moreover, negative effects of diversity (i.e. species richness) on stability (i.e. population persistence) become neutral or positive relationships at these empirical ratios. These results demonstrate that the predator-prey body mass ratios found in nature may be key to enabling persistence of populations in complex food webs and stabilizing the diversity of natural ecosystems.

Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe

Abstract: Summary 1 Arbuscular mycorrhizal (AM) fungi are obligate root symbionts that are present in most terrestrial ecosystems and have roles in plant mineral nutrition, carbon cycling and biotic interactions. In this work, 26 publications were surveyed that report on the occurrence of natural root-colonizing AM fungi identified using rDNA region sequences. A total of 52 host plant species were investigated. Sixteen publications provided data enabling a comparison to be made of AM fungal taxon richness and community composition across 36 host plant species and 25 locations. Ninety-five fungal taxa (small subunit rRNA gene sequence types) were involved, 49 of which were recorded from at least two study sites, and 65 from more than one host plant species. 2 The number of AM fungal taxa per host plant species differed between habitat types: a significantly higher richness was found in tropical forests (18.2 fungal taxa per plant species), followed by grasslands (8.3), temperate forests (5.6) and habitats under anthropogenic influence (arable fields and polluted sites, 5.2). 3 AM fungal communities exhibit differing compositions in broadly defined habitat types: tropical forests, temperate forests and habitats under anthropogenic influence. Grassland locations around the world host heterogeneous AM fungal communities. 4 A number of AM fungi had a global distribution, including sequence types related to the Glomus intraradices/fasciculatum group, G. mosseae, G. sp. UY1225 and G. hoi, as well as the Glomus and Scutellospora types of unknown taxonomic affiliation. Widespread taxa occur in both natural and anthropogenic (disturbed) habitats, and may show high local abundance. However, about 50% of taxa have been recorded from only a single site. 5 The current global analysis of AM fungal communities suggests that soil micro-organisms may exhibit different distribution patterns, resulting in a high variability of taxon richness and composition between particular ecosystems.

Variation in demersal fish species richness in the oceans surrounding New Zealand: an analysis using boosted regression trees

Abstract: We analysed relationships between demersal fish species richness, environment and trawl characteristics using an extensive collection of trawl data from the oceans around New Zealand. Analyses were carried out using both generalised additive models and boosted regression trees (sometimes referred to as 'stochastic gradient boosting'). Depth was the single most important envi- ronmental predictor of variation in species richness, with highest richness occurring at depths of 900 to 1000 m, and with a broad plateau of moderately high richness between 400 and 1100 m. Richness was higher both in waters with high surface concentrations of chlorophyll a and in zones of mixing of water bodies of contrasting origins. Local variation in temperature was also important, with lower richness occurring in waters that were cooler than expected given their depth. Variables describing trawl length, trawl speed, and cod-end mesh size made a substantial contribution to analysis out- comes, even though functions fitted for trawl distance and cod-end mesh size were constrained to reflect the known performance of trawl gear. Species richness declined with increasing cod-end mesh size and increasing trawl speed, but increased with increasing trawl distance, reaching a plateau once trawl distances exceed about 3 nautical miles. Boosted regression trees provided a powerful analysis tool, giving substantially superior predictive performance to generalized additive models, despite the fitting of interaction terms in the latter.

The imprint of the geographical, evolutionary and ecological context on species–area relationships

Abstract: Species–area relationships (SAR) are fundamental in the understanding of biodiversity patterns and of critical importance for predicting species extinction risk worldwide. Despite the enormous attention given to SAR in the form of many individual analyses, little attempt has been made to synthesize these studies. We conducted a quantitative meta-analysis of 794 SAR, comprising a wide span of organisms, habitats and locations. We identified factors reflecting both pattern-based and dynamic approaches to SAR and tested whether these factors leave significant imprints on the slope and strength of SAR. Our analysis revealed that SAR are significantly affected by variables characterizing the sampling scheme, the spatial scale, and the types of organisms or habitats involved. We found that steeper SAR are generated at lower latitudes and by larger organisms. SAR varied significantly between nested and independent sampling schemes and between major ecosystem types, but not generally between the terrestrial and the aquatic realm. Both the fit and the slope of the SAR were scale-dependent. We conclude that factors dynamically regulating species richness at different spatial scales strongly affect the shape of SAR. We highlight important consequences of this systematic variation in SAR for ecological theory, conservation management and extinction risk predictions.

Evaluating the performance of species richness estimators: sensitivity to sample grain size.

Abstract: Summary 1 Fifteen species richness estimators (three asymptotic based on species accumulation curves, 11 nonparametric, and one based in the species–area relationship) were compared by examining their performance in estimating the total species richness of epigean arthropods in the Azorean Laurisilva forests. Data obtained with standardized sampling of 78 transects in natural forest remnants of five islands were aggregated in seven different grains (i.e. ways of defining a single sample): islands, natural areas, transects, pairs of traps, traps, database records and individuals to assess the effect of using different sampling units on species richness estimations. 2 Estimated species richness scores depended both on the estimator considered and on the grain size used to aggregate data. However, several estimators (ACE, Chao1, Jackknife1 and 2 and Bootstrap) were precise in spite of grain variations. Weibull and several recent estimators [proposed by Rosenzweig et al. (Conservation Biology, 2003, 17, 864–874), and Ugland et al. (Journal of Animal Ecology, 2003, 72, 888–897)] performed poorly. 3 Estimations developed using the smaller grain sizes (pair of traps, traps, records and individuals) presented similar scores in a number of estimators (the above-mentioned plus ICE, Chao2, Michaelis–Menten, Negative Exponential and Clench). The estimations from those four sample sizes were also highly correlated. 4 Contrary to other studies, we conclude that most species richness estimators may be useful in biodiversity studies. Owing to their inherent formulas, several nonparametric and asymptotic estimators present insensitivity to differences in the way the samples are aggregated. Thus, they could be used to compare species richness scores obtained from different sampling strategies. Our results also point out that species richness estimations coming from small grain sizes can be directly compared and other estimators could give more precise results in those cases. We propose a decision framework based on our results and on the literature to assess which estimator should be used to compare species richness scores of different sites, depending on the grain size of the original data, and of the kind of data available (species occurrence or abundance data).

Global distribution and conservation of rare and threatened vertebrates

Abstract: 'Silver bullet' conservation strategies assume that the distribution of extinction-prone species in one well studied taxonomic group will predict the distribution of comparable species in other groups. This has been hard to test, but the availability of new databases on the global distribution of birds, mammals and amphibians means that a test is now possible. The three groups show similar patterns in terms of overall species richness, but the distribution of threatened and rare species is different in each group. Silver bullet strategies alone, it seems, miss the target. Instead, priority areas for biodiversity conservation must be based on high-resolution data from multiple taxa. 'Silver-bullet' approaches to conservation assume that conservation strategy can be based on the distribution of species in one or two well known taxonomic groups, as there is high cross-taxon congruence in large-scale patterns of biodiversity. Although birds, mammals and amphibians show similar patterns in terms of overall species richness, the distribution of threatened and rare species is found to be different in each group. Global conservation strategies commonly assume that different taxonomic groups show congruent geographical patterns of diversity, and that the distribution of extinction-prone species in one group can therefore act as a surrogate for vulnerable species in other groups when conservation decisions are being made1,2,3,4. The validity of these assumptions remains unclear, however, because previous tests have been limited in both geographical and taxonomic extent5,6,7,8,9,10,11,12. Here we use a database on the global distribution of 19,349 living bird, mammal and amphibian species to show that, although the distribution of overall species richness is very similar among these groups, congruence in the distribution of rare and threatened species is markedly lower. Congruence is especially low among the very rarest species. Cross-taxon congruence is also highly scale dependent, being particularly low at the finer spatial resolutions relevant to real protected areas. ‘Hotspots’ of rarity and threat are therefore largely non-overlapping across groups, as are areas chosen to maximize species complementarity. Overall, our results indicate that ‘silver-bullet’ conservation strategies alone will not deliver efficient conservation solutions. Instead, priority areas for biodiversity conservation must be based on high-resolution data from multiple taxa.

Neutral theory and the evolution of ecological equivalence

Abstract: Since the publication of the unified neutral theory in 2001, there has been much discussion of the theory, pro and con. The hypothesis of ecological equivalence is the fundamental yet controversial idea behind neutral theory. Assuming trophically similar species are demographically alike (symmetric) on a per capita basis is only an approximation, but it is equivalent to asking: How many of the patterns of ecological communities are the result of species similarities, rather than of species differences? The strategy behind neutral theory is to see how far one can get with the simplification of assuming ecological equivalence before introducing more complexity. In another paper, I review the empirical evidence that led me to hypothesize ecological equivalence among many of the tree species in the species-rich tropical forest on Barro Colorado Island (BCI). In this paper, I develop a simple model for the evolution of ecological equivalence or niche convergence, using as an example evolution of the suite of life history traits characteristic of shade tolerant tropical tree species. Although the model is simple, the conclusions from it seem likely to be robust. I conclude that ecological equivalence for resource use are likely to evolve easily and often, especially in species-rich communities that are dispersal and recruitment limited. In the case of the BCI forest, tree species are strongly dispersal- and recruitment-limited, not only because of restricted seed dispersal, but also because of low recruitment success due to heavy losses of the seedling stages to predators and pathogens and other abiotic stresses such as drought. These factors and the high species richness of the community strongly reduce the potential for competitive exclusion of functionally equivalent or nearly equivalent species.

Habitat complexity and coral reef fish diversity and abundance on Red Sea fringing reefs

Abstract: The influence of several substratum variables, particularly structural complexity and Live coral cover, on coral reef fish species richness and abundance was investigated. By surveying fish species with varying strengths of association with the substratum and at different sampling scales, this study aims to assess the scale-dependence of correlations between substratum characteristics and fish comn~unity parameters. Fish from 5 families (Acanthuridae, Chaetodonhdae, Labridae, Pomacentridae and Scaridae) were counted along transects by visual census. Substratum charactenstics were measured from stereophotographic transects. Three measures of structural complexity were used: (1) an index of surface area, (2) the vanety of different substrata (biological diversity), and (3) numbers of holes (of hfferent sizes). Although the depth of peak specles richness varied between families, overall there was a trend of increasing species richness with increasing depth. Surface index was a poor predictor of overall species richness but was significantly correlated with pomacentrid species richness and abundance on 200 m transects. In contrast, biological diversity of the substratum (H') was highly correlated with overall fish species nchness. Numbers of holes of 3 sizes taken together accounted for 77 O/ O of the variance in overall fish abundance on the 200 m transects. None of the measures of structural complexity were significantly correlated with species nchness or abundance of small, strongly siteattached fish. Live coral cover was not significantly correlated w t h species richness or abundance of fish from any family (except for a weak correlation w ~ t h abundance of obligate corallivorous chaetodontids).

Global tests of biodiversity concordance and the importance of endemism

Abstract: Understanding patterns of biodiversity distribution is essential to conservation strategies1, but severe data constraints make surrogate measures necessary2,3,4. For this reason, many studies have tested the performance of terrestrial vertebrates as surrogates for overall species diversity, but these tests have typically been limited to a single taxon or region3,4,5,6,7,8,9,10. Here we show that global patterns of richness are highly correlated among amphibians, reptiles, birds and mammals, as are endemism patterns. Furthermore, we demonstrate that although the correlation between global richness and endemism is low, aggregate regions selected for high levels of endemism capture significantly more species than expected by chance. Although areas high in endemism have long been targeted for the protection of narrow-ranging species11,12, our findings provide evidence that endemism is also a useful surrogate for the conservation of all terrestrial vertebrates.

Why Are There So Many Species of Herbivorous Insects in Tropical Rainforests

Abstract: Despite recent progress in understanding mechanisms of tree species coexistence in tropical forests, a simple explanation for the even more extensive diversity of insects feeding on these plants has been missing. We compared folivorous insects from temperate and tropical trees to test the hypothesis that herbivore species coexistence in more diverse communities could reflect narrow host specificity relative to less diverse communities. Temperate and tropical tree species of comparable phylogenetic distribution supported similar numbers of folivorous insect species, 29.0 ± 2.2 and 23.5 ± 1.8 per 100 square meters of foliage, respectively. Host specificity did not differ significantly between community samples, indicating that food resources are not more finely partitioned among folivorous insects in tropical than in temperate forests. These findings suggest that the latitudinal gradient in insect species richness could be a direct function of plant diversity, which increased sevenfold from our temperate to tropical study sites.

Global patterns of diversity and community structure in marine bacterioplankton

Abstract: Because of their small size, great abundance and easy dispersal, it is often assumed that marine planktonic microorganisms have a ubiquitous distribution that prevents any structured assembly into local communities. To challenge this view, marine bacterioplankton communities from coastal waters at nine locations distributed world-wide were examined through the use of comprehensive clone libraries of 16S ribosomal RNA genes, used as operational taxonomic units (OTU). Our survey and analyses show that there were marked differences in the composition and richness of OTUs between locations. Remarkably, the global marine bacterioplankton community showed a high degree of endemism, and conversely included few cosmopolitan OTUs. Our data were consistent with a latitudinal gradient of OTU richness. We observed a positive relationship between the relative OTU abundances and their range of occupation, i.e. cosmopolitans had the largest population sizes. Although OTU richness differed among locations, the distributions of the major taxonomic groups represented in the communities were analogous, and all local communities were similarly structured and dominated by a few OTUs showing variable taxonomic affiliations. The observed patterns of OTU richness indicate that similar evolutionary and ecological processes structured the communities. We conclude that marine bacterioplankton share many of the biogeographical and macroecological features of macroscopic organisms. The general processes behind those patterns are likely to be comparable across taxa and major global biomes.

Biogeographic Evolution of Madagascar's Microendemic Biota

Abstract: The endemic species richness on Madagascar, relative to landmass area, is unparalleled in the world. Many organisms on the island have restricted geographical ranges. A comprehensive hypothesis explaining the evolution of this microendemism has yet to be developed. Using an analysis of watersheds in the context of Quaternary climatic shifts, we provide a new mechanistic model to explain the process of explosive speciation on the island. River catchments with sources at relatively low elevations were zones of isolation and hence led to the speciation of locally endemic taxa, whereas those at higher elevations were zones of retreat and dispersion and hence contain proportionately lower levels of microendemism. These results provide a framework for biogeographic and phylogeographic studies, as well as a basis for prioritizing conservation actions of the remaining natural forest habitats on the island.

Ecologically justified charisma: preservation of top predators delivers biodiversity conservation

Abstract: Summary 1. Because of their popular appeal, top vertebrate predators have frequently been used as flagship or umbrella species to acquire financial support, raise environmental awareness and plan systems of protected areas. However, some have claimed that the utilization of charismatic predators may divert a disproportionate amount of funding to a few glamorous species without delivering broader biodiversity benefits, an accusation aggravated by the fact that the conservation of top predators is often complex, difficult and expensive. Therefore, tests are needed of whether apex predators may be employed to achieve ecosystem-level targets. 2. To test such a hypothesis, we compared the biodiversity values recorded at the breeding sites of six raptor species, differing widely in diet and habitat associations, with those observed at three types of control locations, (i) sites randomly chosen in comparable habitat, (ii) breeding sites of a randomly selected bird species of lower trophic level and (iii) breeding sites of a lower trophic level species with specialized ecological requirements. Biodiversity was measured as the richness and evenness of bird, butterfly and tree species. 3. Biodiversity levels were consistently higher at sites occupied by top predators than at any of the three types of control sites. Furthermore, sites occupied by top predators also held greater densities of individual birds and butterflies (all species combined) than control sites. 4. In a reserve-selection simulation exercise, networks of protected sites constructed on the basis of top predators were more efficient than networks based on lower trophic level species, enabling higher biodiversity coverage to be achieved with a smaller number of reserves. 5. Synthesis and applications . Our results provide evidence of a link between the strategic utilization of top predatory species and ecosystem-level conservation. We suggest that, at least in some biological systems, conservation plans based on apex predators could be implemented to deliver broader biodiversity benefits.

Semi‐natural grasslands as population sources for pollinating insects in agricultural landscapes

Abstract: 1. In intensively farmed agricultural landscapes, many species are confined to very small uncultivated areas such as field margins. However, it has been suggested that these small habitat elements cannot support viable populations of all the species observed there. Instead, species richness and abundance in these small habitat fragments may, at least partly, be dependent on dispersal from larger semi-natural grassland fragments.2. We tested this hypothesis for butterflies and bumble bees in 12 independent landscapes in a region of intense agriculture in southern Sweden. In each landscape we surveyed abundance and species richness in one semi-natural grassland, one linear habitat (uncultivated field margin) adjacent to this (called proximate) and one similar linear habitat (called distant) situated at least 1000 m from the semi-natural grassland patch.3. Both species richness and density (individuals per unit area) of butterflies and bumble bees were significantly higher in proximate linear habitats than in distant ones. Moreover, butterfly species richness was higher for a given area in grasslands than in any of the linear habitat types. Butterfly density in grasslands did not differ from that in proximate linear habitats but was lower in distant linear habitats. The effect of isolation on density was stronger for less mobile butterfly species. For bumble bees there was no difference in species richness between grasslands and proximate linear habitats.4. For at least some of the butterfly species even these relatively small fragments of semi-natural grasslands act as population sources from which individuals disperse to the surrounding habitats and thereby contribute to higher densities and species richness in adjacent areas. For bumble bees, it is more likely that the grasslands contain a higher density of nests than the surrounding intensively cultivated landscape, and that the density of foraging bumble bees decreases with increasing distance from the nest.5. Synthesis and application. Habitat fragmentation and intensified agricultural practices are considered to be a threat against services provided by pollinators. In order to sustain the abundance and diversity of insect pollinators in intensively farmed agricultural landscapes, we suggest that preservation of the remaining semi-natural grasslands or re-creation of flower-rich grasslands is essential.

Herbivore impact on grassland plant diversity depends on habitat productivity and herbivore size.

Abstract: Mammalian herbivores can have pronounced effects on plant diversity but are currently declining in many productive ecosystems through direct extirpation, habitat loss and fragmentation, while being simultaneously introduced as livestock in other, often unproductive, ecosystems that lacked such species during recent evolutionary times. The biodiversity consequences of these changes are still poorly understood. We experimentally separated the effects of primary productivity and herbivores of different body size on plant species richness across a 10-fold productivity gradient using a 7-year field experiment at seven grassland sites in North America and Europe. We show that assemblages including large herbivores increased plant diversity at higher productivity but decreased diversity at low productivity, while small herbivores did not have consistent effects along the productivity gradient. The recognition of these large-scale, cross-site patterns in herbivore effects is important for the development of appropriate biodiversity conservation strategies.

Quantifying and interpreting functional diversity of natural communities: practical considerations matter

Abstract: Quantifying the functional diversity in ecological communities is very promising for both studying the response of diversity to environmental gradients and the effects of diversity on ecosystem functioning (i.e. in "biodiversity experiments"). In our view, the Rao coefficient is a good candidate for an efficient functional diversity index. It is, in fact, a generalization of the Simpson's index of diversity and it can be used with various measures of dissimilarity between species (both those based on a single trait and those based on several traits). However, when intending to quantify the functional diversity, we have to make various methodological decisions such as how many and which traits to use, how to weight them, how to combine traits that are measured at different scales and how to quantify the species' relative abundances in a community. Here we discuss these issues with examples from real plant communities and argue that diversity within a single trait is often the most ecologically relevant information. When using indices based on many traits, we plead for careful a priori selection of ecologically relevant traits, although other options are also feasible. When combining many traits, often with different scales, methods considering the extent of species overlap in trait space can be applied for both the qualitative and quantitative traits. Another possibility proposed here is to decompose the variability of a trait in a community according to the relative effect of among- and within-species differentiation (with the latter not considered by current indices of functional diversity), in a way analogical to decomposition of Sum of squares in ANOVA. Further, we show why the functional diversity is more tightly related to species diversity (measured by Simpson index) when biomass is used as a measure of population abundance, in comparison with frequency. Finally, the general expectation is that functional diversity can be a better predictor of ecosystem functioning than the number of species or the number of functional groups. However, we demonstrate that some of the expectations might be overrated - in particular, the "sampling effect" in biodiversity experiments is not avoided when functional diversity is used as a predictor.

Estimating species richness and accumulation by modeling species occurrence and detectability

Abstract: A statistical model is developed for estimating species richness and accumulation by formulating these community-level attributes as functions of model-based estimators of species occurrence while accounting for imperfect detection of individual species. The model requires a sampling protocol wherein repeated observations are made at a collection of sample locations selected to be representative of the community. This temporal replication provides the data needed to resolve the ambiguity between species absence and nondetection when species are unobserved at sample locations. Estimates of species richness and accumulation are computed for two communities, an avian community and a butterfly community. Our model-based estimates suggest that detection failures in many bird species were attributed to low rates of occurrence, as opposed to simply low rates of detection. We estimate that the avian community contains a substantial number of uncommon species and that species richness greatly exceeds the number of species actually observed in the sample. In fact, predictions of species accumulation suggest that even doubling the number of sample locations would not have revealed all of the species in the community. In contrast, our analysis of the butterfly community suggests that many species are relatively common and that the estimated richness of species in the community is nearly equal to the number of species actually detected in the sample. Our predictions of species accumulation suggest that the number of sample locations actually used in the butterfly survey could have been cut in half and the asymptotic richness of species still would have been attained. Our approach of developing occurrence-based summaries of communities while allowing for imperfect detection of species is broadly applicable and should prove useful in the design and analysis of surveys of biodiversity.